Cluster: HRGMv2_2779_CGC20
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2779
- CGC Family ID: CGCFAM_03245
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2779_30 | HRGMv2_2779_30_5 | 2058 | 3674 | - | GH5_1 |
| pfam | HRGMv2_2779_30 | HRGMv2_2779_30_6 | 3900 | 4178 | + | NRDD |
| pfam | HRGMv2_2779_30 | HRGMv2_2779_30_7 | 4337 | 4516 | + | SASP |
| TC | HRGMv2_2779_30 | HRGMv2_2779_30_8 | 5205 | 6923 | - | 1.A.11.2.7 |
| TC | HRGMv2_2779_30 | HRGMv2_2779_30_9 | 7188 | 8024 | - | 3.A.1.132.3 |
| pfam | HRGMv2_2779_30 | HRGMv2_2779_30_10 | 8085 | 9614 | - | PLDc | PLDc | PLDc_2 | PLDc_2 | PLDc_N |
| CAZyme | HRGMv2_2779_30 | HRGMv2_2779_30_11 | 9821 | 11635 | + | GH5_1 |
| CAZyme | HRGMv2_2779_30 | HRGMv2_2779_30_12 | 11839 | 13650 | + | GH5_1 |
| pfam | HRGMv2_2779_30 | HRGMv2_2779_30_13 | 13684 | 14163 | + | dCMP_cyt_deam_1 | MafB19-deam |
| pfam | HRGMv2_2779_30 | HRGMv2_2779_30_14 | 14530 | 15198 | + | Methyltransf_4 |
| CAZyme | HRGMv2_2779_30 | HRGMv2_2779_30_15 | 15233 | 18715 | + | GH59 |
Gene ID: HRGMv2_2779_30_5
Type: CAZyme
Location: 2058 - 3674 (-)
Type: CAZyme
Location: 2058 - 3674 (-)
Gene ID: HRGMv2_2779_30_6
Type: pfam
Location: 3900 - 4178 (+)
Type: pfam
Location: 3900 - 4178 (+)
Gene ID: HRGMv2_2779_30_7
Type: pfam
Location: 4337 - 4516 (+)
Type: pfam
Location: 4337 - 4516 (+)
Gene ID: HRGMv2_2779_30_8
Type: TC
Location: 5205 - 6923 (-)
Type: TC
Location: 5205 - 6923 (-)
Gene ID: HRGMv2_2779_30_9
Type: TC
Location: 7188 - 8024 (-)
Type: TC
Location: 7188 - 8024 (-)
Gene ID: HRGMv2_2779_30_10
Type: pfam
Location: 8085 - 9614 (-)
Type: pfam
Location: 8085 - 9614 (-)
Gene ID: HRGMv2_2779_30_11
Type: CAZyme
Location: 9821 - 11635 (+)
Type: CAZyme
Location: 9821 - 11635 (+)
Gene ID: HRGMv2_2779_30_12
Type: CAZyme
Location: 11839 - 13650 (+)
Type: CAZyme
Location: 11839 - 13650 (+)
Gene ID: HRGMv2_2779_30_13
Type: pfam
Location: 13684 - 14163 (+)
Type: pfam
Location: 13684 - 14163 (+)
Gene ID: HRGMv2_2779_30_14
Type: pfam
Location: 14530 - 15198 (+)
Type: pfam
Location: 14530 - 15198 (+)
Gene ID: HRGMv2_2779_30_15
Type: CAZyme
Location: 15233 - 18715 (+)
Type: CAZyme
Location: 15233 - 18715 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2779_30_13 | vegan > omnivore | 1.52547 | 0.00193 |
| HRGMv2_2779_30_14 | vegan > omnivore | 1.72996 | 0.00193 |