Cluster: HRGMv2_2779_CGC18
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2779
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2779_27 | HRGMv2_2779_27_16 | 13624 | 14667 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_2779_27 | HRGMv2_2779_27_17 | 14654 | 16894 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2779_27 | HRGMv2_2779_27_18 | 16957 | 17625 | - | Hydrolase | HAD | Hydrolase_like | HAD_2 |
| TC | HRGMv2_2779_27 | HRGMv2_2779_27_19 | 17632 | 18393 | - | 3.A.25.2.1 |
| pfam | HRGMv2_2779_27 | HRGMv2_2779_27_20 | 18455 | 19417 | - | cobW | DUF1980_C |
| TC | HRGMv2_2779_27 | HRGMv2_2779_27_21 | 19435 | 20604 | - | 9.B.10.1.1 |
Gene ID: HRGMv2_2779_27_16
Type: CAZyme
Location: 13624 - 14667 (+)
Type: CAZyme
Location: 13624 - 14667 (+)
Gene ID: HRGMv2_2779_27_17
Type:
Location: 14654 - 16894 (+)
Type:
Location: 14654 - 16894 (+)
Gene ID: HRGMv2_2779_27_18
Type: pfam
Location: 16957 - 17625 (-)
Type: pfam
Location: 16957 - 17625 (-)
Gene ID: HRGMv2_2779_27_19
Type: TC
Location: 17632 - 18393 (-)
Type: TC
Location: 17632 - 18393 (-)
Gene ID: HRGMv2_2779_27_20
Type: pfam
Location: 18455 - 19417 (-)
Type: pfam
Location: 18455 - 19417 (-)
Gene ID: HRGMv2_2779_27_21
Type: TC
Location: 19435 - 20604 (-)
Type: TC
Location: 19435 - 20604 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.