Cluster: HRGMv2_2779_CGC17
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2779
- CGC Family ID: CGCFAM_03248
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2779_26 | HRGMv2_2779_26_9 | 11672 | 13465 | - | 2.A.103.1.3 |
| STP | HRGMv2_2779_26 | HRGMv2_2779_26_10 | 13455 | 13916 | - | FHA |
| peptidase | HRGMv2_2779_26 | HRGMv2_2779_26_11 | 14302 | 16734 | + | M06.UPW |
| CAZyme | HRGMv2_2779_26 | HRGMv2_2779_26_12 | 17043 | 18002 | - | GH26 |
| TF | HRGMv2_2779_26 | HRGMv2_2779_26_13 | 18182 | 19192 | + | LacI |
| TC | HRGMv2_2779_26 | HRGMv2_2779_26_14 | 19526 | 20893 | + | 3.A.1.1.44 |
| TC | HRGMv2_2779_26 | HRGMv2_2779_26_15 | 20916 | 21866 | + | 3.A.1.1.7 |
| TC | HRGMv2_2779_26 | HRGMv2_2779_26_16 | 21863 | 22735 | + | 3.A.1.1.47 |
| CAZyme | HRGMv2_2779_26 | HRGMv2_2779_26_17 | 23007 | 24026 | + | GH130_2 |
| pfam | HRGMv2_2779_26 | HRGMv2_2779_26_18 | 24063 | 25235 | + | GlcNAc_2-epim |
| CAZyme | HRGMv2_2779_26 | HRGMv2_2779_26_19 | 25232 | 26413 | + | GH130_1 |
| CAZyme | HRGMv2_2779_26 | HRGMv2_2779_26_20 | 26410 | 27939 | + | CE20 |
Gene ID: HRGMv2_2779_26_9
Type: TC
Location: 11672 - 13465 (-)
Type: TC
Location: 11672 - 13465 (-)
Gene ID: HRGMv2_2779_26_10
Type: STP
Location: 13455 - 13916 (-)
Type: STP
Location: 13455 - 13916 (-)
Gene ID: HRGMv2_2779_26_11
Type: peptidase
Location: 14302 - 16734 (+)
Type: peptidase
Location: 14302 - 16734 (+)
Gene ID: HRGMv2_2779_26_12
Type: CAZyme
Location: 17043 - 18002 (-)
Type: CAZyme
Location: 17043 - 18002 (-)
Gene ID: HRGMv2_2779_26_13
Type: TF
Location: 18182 - 19192 (+)
Type: TF
Location: 18182 - 19192 (+)
Gene ID: HRGMv2_2779_26_14
Type: TC
Location: 19526 - 20893 (+)
Type: TC
Location: 19526 - 20893 (+)
Gene ID: HRGMv2_2779_26_15
Type: TC
Location: 20916 - 21866 (+)
Type: TC
Location: 20916 - 21866 (+)
Gene ID: HRGMv2_2779_26_16
Type: TC
Location: 21863 - 22735 (+)
Type: TC
Location: 21863 - 22735 (+)
Gene ID: HRGMv2_2779_26_17
Type: CAZyme
Location: 23007 - 24026 (+)
Type: CAZyme
Location: 23007 - 24026 (+)
Gene ID: HRGMv2_2779_26_18
Type: pfam
Location: 24063 - 25235 (+)
Type: pfam
Location: 24063 - 25235 (+)
Gene ID: HRGMv2_2779_26_19
Type: CAZyme
Location: 25232 - 26413 (+)
Type: CAZyme
Location: 25232 - 26413 (+)
Gene ID: HRGMv2_2779_26_20
Type: CAZyme
Location: 26410 - 27939 (+)
Type: CAZyme
Location: 26410 - 27939 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2779_26_13 | vegan > omnivore | 1.02143 | 0.00193 |
| HRGMv2_2779_26_15 | vegan > omnivore | 1.55166 | 0.00193 |
| HRGMv2_2779_26_16 | vegan > omnivore | 1.11465 | 0.00193 |
| HRGMv2_2779_26_17 | vegetarian > vegan | 1.15380 | 0.03201 |