Cluster: HRGMv2_2779_CGC16
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2779
- CGC Family ID: CGCFAM_04663
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2779_23 | HRGMv2_2779_23_24 | 26387 | 28285 | - | 3.A.1.135.5 |
| TC | HRGMv2_2779_23 | HRGMv2_2779_23_25 | 28282 | 30024 | - | 3.A.1.135.5 |
| TF | HRGMv2_2779_23 | HRGMv2_2779_23_26 | 30018 | 30500 | - | MarR |
| CAZyme | HRGMv2_2779_23 | HRGMv2_2779_23_27 | 30835 | 33363 | + | CBM76 | GH44 |
Gene ID: HRGMv2_2779_23_24
Type: TC
Location: 26387 - 28285 (-)
Type: TC
Location: 26387 - 28285 (-)
Gene ID: HRGMv2_2779_23_25
Type: TC
Location: 28282 - 30024 (-)
Type: TC
Location: 28282 - 30024 (-)
Gene ID: HRGMv2_2779_23_26
Type: TF
Location: 30018 - 30500 (-)
Type: TF
Location: 30018 - 30500 (-)
Gene ID: HRGMv2_2779_23_27
Type: CAZyme
Location: 30835 - 33363 (+)
Type: CAZyme
Location: 30835 - 33363 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.