Cluster: HRGMv2_2779_CGC15
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2779
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2779_21 | HRGMv2_2779_21_14 | 11280 | 12146 | + | 8.A.5.1.4 |
| pfam | HRGMv2_2779_21 | HRGMv2_2779_21_15 | 12235 | 13260 | - | Radical_SAM |
| pfam | HRGMv2_2779_21 | HRGMv2_2779_21_16 | 13350 | 13877 | - | Ribosomal_S30AE | Ribosom_S30AE_C |
| CAZyme | HRGMv2_2779_21 | HRGMv2_2779_21_17 | 14130 | 15281 | - | GT28 |
| TC | HRGMv2_2779_21 | HRGMv2_2779_21_18 | 15382 | 16671 | - | 2.A.49.9.2 |
Gene ID: HRGMv2_2779_21_14
Type: TC
Location: 11280 - 12146 (+)
Type: TC
Location: 11280 - 12146 (+)
Gene ID: HRGMv2_2779_21_15
Type: pfam
Location: 12235 - 13260 (-)
Type: pfam
Location: 12235 - 13260 (-)
Gene ID: HRGMv2_2779_21_16
Type: pfam
Location: 13350 - 13877 (-)
Type: pfam
Location: 13350 - 13877 (-)
Gene ID: HRGMv2_2779_21_17
Type: CAZyme
Location: 14130 - 15281 (-)
Type: CAZyme
Location: 14130 - 15281 (-)
Gene ID: HRGMv2_2779_21_18
Type: TC
Location: 15382 - 16671 (-)
Type: TC
Location: 15382 - 16671 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.