Cluster: HRGMv2_2779_CGC14
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2779
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2779_20 | HRGMv2_2779_20_11 | 10211 | 12940 | + | CBM23 | GH5_7 |
| NULL(UNKNOWN) | HRGMv2_2779_20 | HRGMv2_2779_20_12 | 13194 | 13847 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2779_20 | HRGMv2_2779_20_13 | 13939 | 16539 | + | 3.A.9.1.2 |
Gene ID: HRGMv2_2779_20_11
Type: CAZyme
Location: 10211 - 12940 (+)
Type: CAZyme
Location: 10211 - 12940 (+)
Gene ID: HRGMv2_2779_20_12
Type:
Location: 13194 - 13847 (+)
Type:
Location: 13194 - 13847 (+)
Gene ID: HRGMv2_2779_20_13
Type: TC
Location: 13939 - 16539 (+)
Type: TC
Location: 13939 - 16539 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2779_20_11 | vegan > omnivore | 1.60539 | 0.00193 |
| HRGMv2_2779_20_11 | vegetarian > omnivore | 1.45287 | 0.01550 |