Cluster: HRGMv2_2779_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2779
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2779_14 | HRGMv2_2779_14_26 | 29901 | 30764 | - | 2.A.7.2.1 |
| TF | HRGMv2_2779_14 | HRGMv2_2779_14_27 | 30779 | 31465 | - | Trans_reg_C |
| STP | HRGMv2_2779_14 | HRGMv2_2779_14_28 | 31462 | 32898 | - | HATPase_c | HisKA |
| TC | HRGMv2_2779_14 | HRGMv2_2779_14_29 | 32948 | 35224 | - | 3.A.3.23.2 |
| TC | HRGMv2_2779_14 | HRGMv2_2779_14_30 | 35417 | 36421 | - | 8.A.5.1.6 |
| TF | HRGMv2_2779_14 | HRGMv2_2779_14_31 | 36511 | 37389 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_2779_14 | HRGMv2_2779_14_32 | 37521 | 39503 | + | GH31_1 |
Gene ID: HRGMv2_2779_14_26
Type: TC
Location: 29901 - 30764 (-)
Type: TC
Location: 29901 - 30764 (-)
Gene ID: HRGMv2_2779_14_27
Type: TF
Location: 30779 - 31465 (-)
Type: TF
Location: 30779 - 31465 (-)
Gene ID: HRGMv2_2779_14_28
Type: STP
Location: 31462 - 32898 (-)
Type: STP
Location: 31462 - 32898 (-)
Gene ID: HRGMv2_2779_14_29
Type: TC
Location: 32948 - 35224 (-)
Type: TC
Location: 32948 - 35224 (-)
Gene ID: HRGMv2_2779_14_30
Type: TC
Location: 35417 - 36421 (-)
Type: TC
Location: 35417 - 36421 (-)
Gene ID: HRGMv2_2779_14_31
Type: TF
Location: 36511 - 37389 (-)
Type: TF
Location: 36511 - 37389 (-)
Gene ID: HRGMv2_2779_14_32
Type: CAZyme
Location: 37521 - 39503 (+)
Type: CAZyme
Location: 37521 - 39503 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.