Cluster: HRGMv2_2779_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2779
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2779_1 | HRGMv2_2779_1_6 | 6208 | 7503 | + | 3.A.1.1.28 |
| TC | HRGMv2_2779_1 | HRGMv2_2779_1_7 | 7504 | 8382 | + | 3.A.1.1.28 |
| TC | HRGMv2_2779_1 | HRGMv2_2779_1_8 | 8379 | 9227 | + | 3.A.1.1.28 |
| CAZyme | HRGMv2_2779_1 | HRGMv2_2779_1_9 | 9242 | 10654 | + | GH13_18 |
| CAZyme | HRGMv2_2779_1 | HRGMv2_2779_1_10 | 10734 | 12923 | + | GH36 |
Gene ID: HRGMv2_2779_1_6
Type: TC
Location: 6208 - 7503 (+)
Type: TC
Location: 6208 - 7503 (+)
Gene ID: HRGMv2_2779_1_7
Type: TC
Location: 7504 - 8382 (+)
Type: TC
Location: 7504 - 8382 (+)
Gene ID: HRGMv2_2779_1_8
Type: TC
Location: 8379 - 9227 (+)
Type: TC
Location: 8379 - 9227 (+)
Gene ID: HRGMv2_2779_1_9
Type: CAZyme
Location: 9242 - 10654 (+)
Type: CAZyme
Location: 9242 - 10654 (+)
Gene ID: HRGMv2_2779_1_10
Type: CAZyme
Location: 10734 - 12923 (+)
Type: CAZyme
Location: 10734 - 12923 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.