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Cluster: HRGMv2_2773_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2773_12 HRGMv2_2773_12_11 11261 13063 - PL33_1
TF HRGMv2_2773_12 HRGMv2_2773_12_12 13075 14337 - HTH_AraC | HTH_AraC
TC HRGMv2_2773_12 HRGMv2_2773_12_13 14312 16132 - 8.A.59.2.1
STP HRGMv2_2773_12 HRGMv2_2773_12_14 16477 17802 + SBP_bac_1
TC HRGMv2_2773_12 HRGMv2_2773_12_15 17939 18865 + 3.A.1.1.20
TC HRGMv2_2773_12 HRGMv2_2773_12_16 18883 19743 + 3.A.1.1.11
CAZyme HRGMv2_2773_12 HRGMv2_2773_12_17 19928 21724 + GH2
CAZyme HRGMv2_2773_12 HRGMv2_2773_12_18 21730 22890 + GH88
CAZyme HRGMv2_2773_12 HRGMv2_2773_12_19 22890 24578 + GH154
CAZyme HRGMv2_2773_12 HRGMv2_2773_12_20 24592 27618 + GH2
Gene ID: HRGMv2_2773_12_11
Type: CAZyme
Location: 11261 - 13063 (-)
Gene ID: HRGMv2_2773_12_12
Type: TF
Location: 13075 - 14337 (-)
Gene ID: HRGMv2_2773_12_13
Type: TC
Location: 14312 - 16132 (-)
Gene ID: HRGMv2_2773_12_14
Type: STP
Location: 16477 - 17802 (+)
Gene ID: HRGMv2_2773_12_15
Type: TC
Location: 17939 - 18865 (+)
Gene ID: HRGMv2_2773_12_16
Type: TC
Location: 18883 - 19743 (+)
Gene ID: HRGMv2_2773_12_17
Type: CAZyme
Location: 19928 - 21724 (+)
Gene ID: HRGMv2_2773_12_18
Type: CAZyme
Location: 21730 - 22890 (+)
Gene ID: HRGMv2_2773_12_19
Type: CAZyme
Location: 22890 - 24578 (+)
Gene ID: HRGMv2_2773_12_20
Type: CAZyme
Location: 24592 - 27618 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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