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Cluster: HRGMv2_2773_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2773_39 HRGMv2_2773_39_6 5110 5820 + 1.A.14.2.2
STP HRGMv2_2773_39 HRGMv2_2773_39_7 6216 6980 + Peptidase_M23
TC HRGMv2_2773_39 HRGMv2_2773_39_8 7082 7657 - 3.A.1.17.12
pfam HRGMv2_2773_39 HRGMv2_2773_39_9 7651 8415 - BPD_transp_1
TC HRGMv2_2773_39 HRGMv2_2773_39_10 8634 9914 + 2.A.26.1.9
TC HRGMv2_2773_39 HRGMv2_2773_39_11 10268 11134 - 3.A.1.1.48
TC HRGMv2_2773_39 HRGMv2_2773_39_12 11141 12109 - 3.A.1.1.4
NULL(UNKNOWN) HRGMv2_2773_39 HRGMv2_2773_39_13 12219 13661 - NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_2773_39 HRGMv2_2773_39_14 13749 14756 - LacI
CAZyme HRGMv2_2773_39 HRGMv2_2773_39_15 15271 17706 + GH94
Gene ID: HRGMv2_2773_39_6
Type: TC
Location: 5110 - 5820 (+)
Gene ID: HRGMv2_2773_39_7
Type: STP
Location: 6216 - 6980 (+)
Gene ID: HRGMv2_2773_39_8
Type: TC
Location: 7082 - 7657 (-)
Gene ID: HRGMv2_2773_39_9
Type: pfam
Location: 7651 - 8415 (-)
Gene ID: HRGMv2_2773_39_10
Type: TC
Location: 8634 - 9914 (+)
Gene ID: HRGMv2_2773_39_11
Type: TC
Location: 10268 - 11134 (-)
Gene ID: HRGMv2_2773_39_12
Type: TC
Location: 11141 - 12109 (-)
Gene ID: HRGMv2_2773_39_13
Type:
Location: 12219 - 13661 (-)
Gene ID: HRGMv2_2773_39_14
Type: TF
Location: 13749 - 14756 (-)
Gene ID: HRGMv2_2773_39_15
Type: CAZyme
Location: 15271 - 17706 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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