Cluster: HRGMv2_2765_CGC4
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2765
- CGC Family ID: CGCFAM_00099
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2765_4 | HRGMv2_2765_4_2 | 1590 | 2489 | + | 4.A.1.2.2 |
| CAZyme | HRGMv2_2765_4 | HRGMv2_2765_4_3 | 2515 | 3945 | + | GH1 |
| TC | HRGMv2_2765_4 | HRGMv2_2765_4_4 | 3965 | 4474 | + | 4.A.1.2.6 |
Gene ID: HRGMv2_2765_4_2
Type: TC
Location: 1590 - 2489 (+)
Type: TC
Location: 1590 - 2489 (+)
Gene ID: HRGMv2_2765_4_3
Type: CAZyme
Location: 2515 - 3945 (+)
Type: CAZyme
Location: 2515 - 3945 (+)
Gene ID: HRGMv2_2765_4_4
Type: TC
Location: 3965 - 4474 (+)
Type: TC
Location: 3965 - 4474 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2765_4_2 | vegan > omnivore | 1.43991 | 0.00000 |
| HRGMv2_2765_4_2 | vegetarian > omnivore | 1.71850 | 0.02258 |
| HRGMv2_2765_4_3 | vegan > omnivore | 1.43336 | 0.00000 |
| HRGMv2_2765_4_3 | vegetarian > omnivore | 1.76866 | 0.02258 |