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Cluster: HRGMv2_2765_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2765_36 HRGMv2_2765_36_12 11666 12457 - GT2
CAZyme HRGMv2_2765_36 HRGMv2_2765_36_13 12472 14898 - GT2 | GT2
pfam HRGMv2_2765_36 HRGMv2_2765_36_14 15047 16123 - SpoIID
TC HRGMv2_2765_36 HRGMv2_2765_36_15 16312 17103 + 2.A.79.1.5
pfam HRGMv2_2765_36 HRGMv2_2765_36_16 17100 17564 + ThrE_2
STP HRGMv2_2765_36 HRGMv2_2765_36_17 17628 18203 + Nitroreductase
TC HRGMv2_2765_36 HRGMv2_2765_36_18 18401 19243 + 3.A.1.3.27
TC HRGMv2_2765_36 HRGMv2_2765_36_19 19352 20116 + 3.A.1.3.20
TC HRGMv2_2765_36 HRGMv2_2765_36_20 20106 20846 + 3.A.1.3.25
Gene ID: HRGMv2_2765_36_12
Type: CAZyme
Location: 11666 - 12457 (-)
Gene ID: HRGMv2_2765_36_13
Type: CAZyme
Location: 12472 - 14898 (-)
Gene ID: HRGMv2_2765_36_14
Type: pfam
Location: 15047 - 16123 (-)
Gene ID: HRGMv2_2765_36_15
Type: TC
Location: 16312 - 17103 (+)
Gene ID: HRGMv2_2765_36_16
Type: pfam
Location: 17100 - 17564 (+)
Gene ID: HRGMv2_2765_36_17
Type: STP
Location: 17628 - 18203 (+)
Gene ID: HRGMv2_2765_36_18
Type: TC
Location: 18401 - 19243 (+)
Gene ID: HRGMv2_2765_36_19
Type: TC
Location: 19352 - 20116 (+)
Gene ID: HRGMv2_2765_36_20
Type: TC
Location: 20106 - 20846 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
Faecalibacterium
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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