Cluster: HRGMv2_2765_CGC17
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2765
- CGC Family ID: CGCFAM_00453
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2765_19 | HRGMv2_2765_19_29 | 31299 | 32978 | - | GH13_31 |
| TC | HRGMv2_2765_19 | HRGMv2_2765_19_30 | 32971 | 33387 | - | 4.A.6.1.19 |
| TC | HRGMv2_2765_19 | HRGMv2_2765_19_31 | 33462 | 34055 | - | 4.A.6.1.13 |
Gene ID: HRGMv2_2765_19_29
Type: CAZyme
Location: 31299 - 32978 (-)
Type: CAZyme
Location: 31299 - 32978 (-)
Gene ID: HRGMv2_2765_19_30
Type: TC
Location: 32971 - 33387 (-)
Type: TC
Location: 32971 - 33387 (-)
Gene ID: HRGMv2_2765_19_31
Type: TC
Location: 33462 - 34055 (-)
Type: TC
Location: 33462 - 34055 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2765_19_29 | vegetarian > omnivore | 2.54528 | 0.03814 |
| HRGMv2_2765_19_29 | vegetarian > vegan | 2.23593 | 0.02221 |
| HRGMv2_2765_19_30 | vegetarian > omnivore | 14.07878 | 0.02258 |
| HRGMv2_2765_19_30 | vegetarian > vegan | 14.07878 | 0.02221 |