Cluster: HRGMv2_2765_CGC15
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2765
- CGC Family ID: CGCFAM_10174
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2765_15 | HRGMv2_2765_15_31 | 34046 | 35401 | - | 3.A.5.2.2 |
| STP | HRGMv2_2765_15 | HRGMv2_2765_15_32 | 35430 | 35813 | - | Sigma70_r4 |
| STP | HRGMv2_2765_15 | HRGMv2_2765_15_33 | 36040 | 36948 | + | PALP |
| TC | HRGMv2_2765_15 | HRGMv2_2765_15_34 | 36979 | 38307 | + | 2.A.66.1.33 |
| TC | HRGMv2_2765_15 | HRGMv2_2765_15_35 | 38353 | 39177 | - | 3.A.1.34.1 |
| TC | HRGMv2_2765_15 | HRGMv2_2765_15_36 | 39179 | 40108 | - | 3.A.1.34.1 |
| pfam | HRGMv2_2765_15 | HRGMv2_2765_15_37 | 40338 | 41435 | - | ABC_sub_bind | TAT_signal |
| NULL(UNKNOWN) | HRGMv2_2765_15 | HRGMv2_2765_15_38 | 41889 | 42722 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2765_15 | HRGMv2_2765_15_39 | 42716 | 43417 | - | 3.A.1.132.6 |
| TF | HRGMv2_2765_15 | HRGMv2_2765_15_40 | 43410 | 43790 | - | GntR |
| CAZyme | HRGMv2_2765_15 | HRGMv2_2765_15_41 | 43937 | 44935 | + | GT2 |
Gene ID: HRGMv2_2765_15_31
Type: TC
Location: 34046 - 35401 (-)
Type: TC
Location: 34046 - 35401 (-)
Gene ID: HRGMv2_2765_15_32
Type: STP
Location: 35430 - 35813 (-)
Type: STP
Location: 35430 - 35813 (-)
Gene ID: HRGMv2_2765_15_33
Type: STP
Location: 36040 - 36948 (+)
Type: STP
Location: 36040 - 36948 (+)
Gene ID: HRGMv2_2765_15_34
Type: TC
Location: 36979 - 38307 (+)
Type: TC
Location: 36979 - 38307 (+)
Gene ID: HRGMv2_2765_15_35
Type: TC
Location: 38353 - 39177 (-)
Type: TC
Location: 38353 - 39177 (-)
Gene ID: HRGMv2_2765_15_36
Type: TC
Location: 39179 - 40108 (-)
Type: TC
Location: 39179 - 40108 (-)
Gene ID: HRGMv2_2765_15_37
Type: pfam
Location: 40338 - 41435 (-)
Type: pfam
Location: 40338 - 41435 (-)
Gene ID: HRGMv2_2765_15_38
Type:
Location: 41889 - 42722 (-)
Type:
Location: 41889 - 42722 (-)
Gene ID: HRGMv2_2765_15_39
Type: TC
Location: 42716 - 43417 (-)
Type: TC
Location: 42716 - 43417 (-)
Gene ID: HRGMv2_2765_15_40
Type: TF
Location: 43410 - 43790 (-)
Type: TF
Location: 43410 - 43790 (-)
Gene ID: HRGMv2_2765_15_41
Type: CAZyme
Location: 43937 - 44935 (+)
Type: CAZyme
Location: 43937 - 44935 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.