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Cluster: HRGMv2_2765_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2765_12 HRGMv2_2765_12_31 34343 36139 - PL33_1
TF HRGMv2_2765_12 HRGMv2_2765_12_32 36307 37569 - HTH_AraC | HTH_AraC
TC HRGMv2_2765_12 HRGMv2_2765_12_33 37544 39364 - 8.A.59.2.1
TC HRGMv2_2765_12 HRGMv2_2765_12_34 39712 41031 + 3.A.1.1.44
TC HRGMv2_2765_12 HRGMv2_2765_12_35 41204 42133 + 3.A.1.1.20
TC HRGMv2_2765_12 HRGMv2_2765_12_36 42152 43012 + 3.A.1.1.11
CAZyme HRGMv2_2765_12 HRGMv2_2765_12_37 43084 44880 + GH2
CAZyme HRGMv2_2765_12 HRGMv2_2765_12_38 45018 46178 + GH88
CAZyme HRGMv2_2765_12 HRGMv2_2765_12_39 46178 47866 + GH154
CAZyme HRGMv2_2765_12 HRGMv2_2765_12_40 47959 50994 + GH2
Gene ID: HRGMv2_2765_12_31
Type: CAZyme
Location: 34343 - 36139 (-)
Gene ID: HRGMv2_2765_12_32
Type: TF
Location: 36307 - 37569 (-)
Gene ID: HRGMv2_2765_12_33
Type: TC
Location: 37544 - 39364 (-)
Gene ID: HRGMv2_2765_12_34
Type: TC
Location: 39712 - 41031 (+)
Gene ID: HRGMv2_2765_12_35
Type: TC
Location: 41204 - 42133 (+)
Gene ID: HRGMv2_2765_12_36
Type: TC
Location: 42152 - 43012 (+)
Gene ID: HRGMv2_2765_12_37
Type: CAZyme
Location: 43084 - 44880 (+)
Gene ID: HRGMv2_2765_12_38
Type: CAZyme
Location: 45018 - 46178 (+)
Gene ID: HRGMv2_2765_12_39
Type: CAZyme
Location: 46178 - 47866 (+)
Gene ID: HRGMv2_2765_12_40
Type: CAZyme
Location: 47959 - 50994 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
Faecalibacterium
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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