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Cluster: HRGMv2_2765_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2765_12 HRGMv2_2765_12_18 17709 19052 + 2.A.66.1.32
NULL(UNKNOWN) HRGMv2_2765_12 HRGMv2_2765_12_19 19128 19322 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2765_12 HRGMv2_2765_12_20 19421 21193 - 9.B.33.1.1
CAZyme HRGMv2_2765_12 HRGMv2_2765_12_21 21212 23218 - GH115
TC HRGMv2_2765_12 HRGMv2_2765_12_22 23281 24132 - 3.A.1.1.11
TC HRGMv2_2765_12 HRGMv2_2765_12_23 24145 25056 - 3.A.1.1.11
STP HRGMv2_2765_12 HRGMv2_2765_12_24 25137 26486 - SBP_bac_1
TF HRGMv2_2765_12 HRGMv2_2765_12_25 26660 28117 - HTH_AraC
CAZyme HRGMv2_2765_12 HRGMv2_2765_12_26 28451 29980 + GH28
Gene ID: HRGMv2_2765_12_18
Type: TC
Location: 17709 - 19052 (+)
Gene ID: HRGMv2_2765_12_19
Type:
Location: 19128 - 19322 (-)
Gene ID: HRGMv2_2765_12_20
Type: TC
Location: 19421 - 21193 (-)
Gene ID: HRGMv2_2765_12_21
Type: CAZyme
Location: 21212 - 23218 (-)
Gene ID: HRGMv2_2765_12_22
Type: TC
Location: 23281 - 24132 (-)
Gene ID: HRGMv2_2765_12_23
Type: TC
Location: 24145 - 25056 (-)
Gene ID: HRGMv2_2765_12_24
Type: STP
Location: 25137 - 26486 (-)
Gene ID: HRGMv2_2765_12_25
Type: TF
Location: 26660 - 28117 (-)
Gene ID: HRGMv2_2765_12_26
Type: CAZyme
Location: 28451 - 29980 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
Faecalibacterium
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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