Cluster: HRGMv2_2758_CGC3
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2758
- CGC Family ID: CGCFAM_03214
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2758_8 | HRGMv2_2758_8_22 | 22048 | 23388 | + | 2.A.22.5.2 |
| NULL(UNKNOWN) | HRGMv2_2758_8 | HRGMv2_2758_8_23 | 23449 | 23796 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2758_8 | HRGMv2_2758_8_24 | 23900 | 25030 | + | GH18 |
| pfam | HRGMv2_2758_8 | HRGMv2_2758_8_25 | 25079 | 26470 | - | FAD-depend_C |
| TC | HRGMv2_2758_8 | HRGMv2_2758_8_26 | 26681 | 27259 | + | 4.F.1.1.7 |
| pfam | HRGMv2_2758_8 | HRGMv2_2758_8_27 | 27256 | 27729 | + | CrtO |
| CAZyme | HRGMv2_2758_8 | HRGMv2_2758_8_28 | 27726 | 29777 | + | GT28 |
Gene ID: HRGMv2_2758_8_22
Type: TC
Location: 22048 - 23388 (+)
Type: TC
Location: 22048 - 23388 (+)
Gene ID: HRGMv2_2758_8_23
Type:
Location: 23449 - 23796 (-)
Type:
Location: 23449 - 23796 (-)
Gene ID: HRGMv2_2758_8_24
Type: CAZyme
Location: 23900 - 25030 (+)
Type: CAZyme
Location: 23900 - 25030 (+)
Gene ID: HRGMv2_2758_8_25
Type: pfam
Location: 25079 - 26470 (-)
Type: pfam
Location: 25079 - 26470 (-)
Gene ID: HRGMv2_2758_8_26
Type: TC
Location: 26681 - 27259 (+)
Type: TC
Location: 26681 - 27259 (+)
Gene ID: HRGMv2_2758_8_27
Type: pfam
Location: 27256 - 27729 (+)
Type: pfam
Location: 27256 - 27729 (+)
Gene ID: HRGMv2_2758_8_28
Type: CAZyme
Location: 27726 - 29777 (+)
Type: CAZyme
Location: 27726 - 29777 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
F23-B02
Species
F23-B02 sp001916715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2758_8_24 | vegetarian > vegan | 1.24144 | 0.02677 |