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Cluster: HRGMv2_2758_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2758_2 HRGMv2_2758_2_27 28812 29525 - 3.A.1.147.6
pfam HRGMv2_2758_2 HRGMv2_2758_2_28 29594 30502 - ABC2_membrane | ABC2_membrane_3
TC HRGMv2_2758_2 HRGMv2_2758_2_29 30499 31416 - 3.A.1.105.3
TF HRGMv2_2758_2 HRGMv2_2758_2_30 31425 32426 - HTH_3
STP HRGMv2_2758_2 HRGMv2_2758_2_31 32618 33280 - TetR_N
TC HRGMv2_2758_2 HRGMv2_2758_2_32 33475 34698 - 3.B.1.1.2
TC HRGMv2_2758_2 HRGMv2_2758_2_33 34710 35114 - 3.B.1.1.2
pfam HRGMv2_2758_2 HRGMv2_2758_2_34 35104 35457 - OAD_gamma
TC HRGMv2_2758_2 HRGMv2_2758_2_35 35471 36853 - 3.B.1.1.6
NULL(UNKNOWN) HRGMv2_2758_2 HRGMv2_2758_2_36 37011 37295 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2758_2 HRGMv2_2758_2_37 37315 39474 - GT51
Gene ID: HRGMv2_2758_2_27
Type: TC
Location: 28812 - 29525 (-)
Gene ID: HRGMv2_2758_2_28
Type: pfam
Location: 29594 - 30502 (-)
Gene ID: HRGMv2_2758_2_29
Type: TC
Location: 30499 - 31416 (-)
Gene ID: HRGMv2_2758_2_30
Type: TF
Location: 31425 - 32426 (-)
Gene ID: HRGMv2_2758_2_31
Type: STP
Location: 32618 - 33280 (-)
Gene ID: HRGMv2_2758_2_32
Type: TC
Location: 33475 - 34698 (-)
Gene ID: HRGMv2_2758_2_33
Type: TC
Location: 34710 - 35114 (-)
Gene ID: HRGMv2_2758_2_34
Type: pfam
Location: 35104 - 35457 (-)
Gene ID: HRGMv2_2758_2_35
Type: TC
Location: 35471 - 36853 (-)
Gene ID: HRGMv2_2758_2_36
Type:
Location: 37011 - 37295 (-)
Gene ID: HRGMv2_2758_2_37
Type: CAZyme
Location: 37315 - 39474 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2758_2_29 vegetarian > vegan 1.16587 0.02677
HRGMv2_2758_2_31 vegetarian > vegan 1.06385 0.02677

🧭 Explore Read Mapping of CGC

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