dbCAN HGM

Cluster: HRGMv2_2756_CGC11

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_2756_17	HRGMv2_2756_17_7	5028	6065	+	3.A.1.24.3
TC	HRGMv2_2756_17	HRGMv2_2756_17_8	6062	6742	+	3.A.1.24.5
pfam	HRGMv2_2756_17	HRGMv2_2756_17_9	6757	7716	+	Ldh_1_N \| Ldh_1_C
TC	HRGMv2_2756_17	HRGMv2_2756_17_10	7751	8629	+	3.A.1.24.5
CAZyme	HRGMv2_2756_17	HRGMv2_2756_17_11	8698	10092	+	AA4
STP	HRGMv2_2756_17	HRGMv2_2756_17_12	10076	11242	+	Aminotran_1_2
pfam	HRGMv2_2756_17	HRGMv2_2756_17_13	11469	11723	+	DUF5348
TC	HRGMv2_2756_17	HRGMv2_2756_17_14	12010	13347	+	2.A.66.1.28
TC	HRGMv2_2756_17	HRGMv2_2756_17_15	13482	14315	+	3.A.1.3.15
CAZyme	HRGMv2_2756_17	HRGMv2_2756_17_16	14533	15555	+	GT2

Gene ID: HRGMv2_2756_17_7
Type: TC
Location: 5028 - 6065 (+)

Gene ID: HRGMv2_2756_17_8
Type: TC
Location: 6062 - 6742 (+)

Gene ID: HRGMv2_2756_17_9
Type: pfam
Location: 6757 - 7716 (+)

Gene ID: HRGMv2_2756_17_10
Type: TC
Location: 7751 - 8629 (+)

Gene ID: HRGMv2_2756_17_11
Type: CAZyme
Location: 8698 - 10092 (+)

Gene ID: HRGMv2_2756_17_12
Type: STP
Location: 10076 - 11242 (+)

Gene ID: HRGMv2_2756_17_13
Type: pfam
Location: 11469 - 11723 (+)

Gene ID: HRGMv2_2756_17_14
Type: TC
Location: 12010 - 13347 (+)

Gene ID: HRGMv2_2756_17_15
Type: TC
Location: 13482 - 14315 (+)

Gene ID: HRGMv2_2756_17_16
Type: CAZyme
Location: 14533 - 15555 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_2756_17_7	omnivore > vegan	1.75357	0.03606
HRGMv2_2756_17_7	vegetarian > vegan	1.67108	0.00364
HRGMv2_2756_17_8	vegetarian > vegan	1.13288	0.00364
HRGMv2_2756_17_13	vegetarian > vegan	1.88792	0.00364