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Cluster: HRGMv2_2745_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2745_8 HRGMv2_2745_8_18 20894 21808 - 2.A.69.4.3
pfam HRGMv2_2745_8 HRGMv2_2745_8_19 21811 22605 - adh_short | KR | adh_short_C2
TC HRGMv2_2745_8 HRGMv2_2745_8_20 22854 24497 - 3.A.1.5.41
TC HRGMv2_2745_8 HRGMv2_2745_8_21 24743 25897 - 3.A.18.1.1
NULL(UNKNOWN) HRGMv2_2745_8 HRGMv2_2745_8_22 25973 26602 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2745_8 HRGMv2_2745_8_23 26737 29145 - GT35
CAZyme HRGMv2_2745_8 HRGMv2_2745_8_24 29166 30599 - GT5
pfam HRGMv2_2745_8 HRGMv2_2745_8_25 30627 31742 - NTP_transferase | Hexapep_GlmU
pfam HRGMv2_2745_8 HRGMv2_2745_8_26 31739 32926 - NTP_transferase | Hexapep_GlmU
CAZyme HRGMv2_2745_8 HRGMv2_2745_8_27 32981 34909 - GH13_9
Gene ID: HRGMv2_2745_8_18
Type: TC
Location: 20894 - 21808 (-)
Gene ID: HRGMv2_2745_8_19
Type: pfam
Location: 21811 - 22605 (-)
Gene ID: HRGMv2_2745_8_20
Type: TC
Location: 22854 - 24497 (-)
Gene ID: HRGMv2_2745_8_21
Type: TC
Location: 24743 - 25897 (-)
Gene ID: HRGMv2_2745_8_22
Type:
Location: 25973 - 26602 (-)
Gene ID: HRGMv2_2745_8_23
Type: CAZyme
Location: 26737 - 29145 (-)
Gene ID: HRGMv2_2745_8_24
Type: CAZyme
Location: 29166 - 30599 (-)
Gene ID: HRGMv2_2745_8_25
Type: pfam
Location: 30627 - 31742 (-)
Gene ID: HRGMv2_2745_8_26
Type: pfam
Location: 31739 - 32926 (-)
Gene ID: HRGMv2_2745_8_27
Type: CAZyme
Location: 32981 - 34909 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2745_8_20 vegetarian > vegan 1.72007 0.00007
HRGMv2_2745_8_22 vegetarian > vegan 1.48242 0.00007
HRGMv2_2745_8_25 vegetarian > vegan 1.18861 0.00007

🧭 Explore Read Mapping of CGC

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