Cluster: HRGMv2_2745_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2745
- CGC Family ID: CGCFAM_00257
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2745_2 | HRGMv2_2745_2_200 | 212560 | 213309 | - | 3.A.1.3.25 |
| TC | HRGMv2_2745_2 | HRGMv2_2745_2_201 | 213293 | 214036 | - | 3.A.1.3.15 |
| TC | HRGMv2_2745_2 | HRGMv2_2745_2_202 | 214147 | 215007 | - | 3.A.1.3.27 |
| NULL(UNKNOWN) | HRGMv2_2745_2 | HRGMv2_2745_2_203 | 215317 | 216003 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2745_2 | HRGMv2_2745_2_204 | 216000 | 217127 | - | GT28 |
Gene ID: HRGMv2_2745_2_200
Type: TC
Location: 212560 - 213309 (-)
Type: TC
Location: 212560 - 213309 (-)
Gene ID: HRGMv2_2745_2_201
Type: TC
Location: 213293 - 214036 (-)
Type: TC
Location: 213293 - 214036 (-)
Gene ID: HRGMv2_2745_2_202
Type: TC
Location: 214147 - 215007 (-)
Type: TC
Location: 214147 - 215007 (-)
Gene ID: HRGMv2_2745_2_203
Type:
Location: 215317 - 216003 (-)
Type:
Location: 215317 - 216003 (-)
Gene ID: HRGMv2_2745_2_204
Type: CAZyme
Location: 216000 - 217127 (-)
Type: CAZyme
Location: 216000 - 217127 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Hominicoprocola
Species
Hominicoprocola sp900550165
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2745_2_201 | vegetarian > vegan | 1.03928 | 0.00007 |
| HRGMv2_2745_2_202 | vegetarian > vegan | 1.20036 | 0.00007 |
| HRGMv2_2745_2_204 | vegetarian > vegan | 1.30762 | 0.00007 |