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Cluster: HRGMv2_2740_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2740_8 HRGMv2_2740_8_59 61014 62492 - 9.A.11.1.2
pfam HRGMv2_2740_8 HRGMv2_2740_8_60 62613 63287 + DUF421
pfam HRGMv2_2740_8 HRGMv2_2740_8_61 63284 63664 + DUF4363
TC HRGMv2_2740_8 HRGMv2_2740_8_62 63722 65506 - 3.A.16.1.2
pfam HRGMv2_2740_8 HRGMv2_2740_8_63 65666 65863 - SASP
pfam HRGMv2_2740_8 HRGMv2_2740_8_64 66058 67557 + FGGY_N | FGGY_C
CAZyme HRGMv2_2740_8 HRGMv2_2740_8_65 67597 68397 - CE4
CAZyme HRGMv2_2740_8 HRGMv2_2740_8_66 68529 70139 + CBM2 | GH5_2
Gene ID: HRGMv2_2740_8_59
Type: TC
Location: 61014 - 62492 (-)
Gene ID: HRGMv2_2740_8_60
Type: pfam
Location: 62613 - 63287 (+)
Gene ID: HRGMv2_2740_8_61
Type: pfam
Location: 63284 - 63664 (+)
Gene ID: HRGMv2_2740_8_62
Type: TC
Location: 63722 - 65506 (-)
Gene ID: HRGMv2_2740_8_63
Type: pfam
Location: 65666 - 65863 (-)
Gene ID: HRGMv2_2740_8_64
Type: pfam
Location: 66058 - 67557 (+)
Gene ID: HRGMv2_2740_8_65
Type: CAZyme
Location: 67597 - 68397 (-)
Gene ID: HRGMv2_2740_8_66
Type: CAZyme
Location: 68529 - 70139 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2740_8_63 omnivore > vegan 2.22766 0.03830

🧭 Explore Read Mapping of CGC

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