Cluster: HRGMv2_2739_CGC10
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2739
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2739_27 | HRGMv2_2739_27_12 | 11117 | 11407 | + | 4.A.7.1.2 |
| TC | HRGMv2_2739_27 | HRGMv2_2739_27_13 | 11463 | 12758 | + | 4.A.7.1.2 |
| pfam | HRGMv2_2739_27 | HRGMv2_2739_27_14 | 12874 | 13260 | - | Flavodoxin_4 |
| TC | HRGMv2_2739_27 | HRGMv2_2739_27_15 | 13434 | 15254 | + | 3.A.16.1.2 |
| CAZyme | HRGMv2_2739_27 | HRGMv2_2739_27_16 | 15274 | 16101 | + | GT8 |
Gene ID: HRGMv2_2739_27_12
Type: TC
Location: 11117 - 11407 (+)
Type: TC
Location: 11117 - 11407 (+)
Gene ID: HRGMv2_2739_27_13
Type: TC
Location: 11463 - 12758 (+)
Type: TC
Location: 11463 - 12758 (+)
Gene ID: HRGMv2_2739_27_14
Type: pfam
Location: 12874 - 13260 (-)
Type: pfam
Location: 12874 - 13260 (-)
Gene ID: HRGMv2_2739_27_15
Type: TC
Location: 13434 - 15254 (+)
Type: TC
Location: 13434 - 15254 (+)
Gene ID: HRGMv2_2739_27_16
Type: CAZyme
Location: 15274 - 16101 (+)
Type: CAZyme
Location: 15274 - 16101 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Angelakisella
Species
Angelakisella sp900547385
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2739_27_12 | vegetarian > omnivore | 1.93832 | 0.04329 |
| HRGMv2_2739_27_12 | vegetarian > vegan | 3.05164 | 0.03451 |
| HRGMv2_2739_27_13 | vegetarian > omnivore | 1.44002 | 0.04329 |
| HRGMv2_2739_27_13 | vegetarian > vegan | 2.82533 | 0.03451 |
| HRGMv2_2739_27_14 | vegetarian > omnivore | 1.14038 | 0.04329 |
| HRGMv2_2739_27_14 | vegetarian > vegan | 1.25298 | 0.03451 |