Cluster: HRGMv2_2733_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2733
- CGC Family ID: CGCFAM_00411
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2733_1 | HRGMv2_2733_1_1195 | 1297594 | 1298349 | - | CBM21 |
| TC | HRGMv2_2733_1 | HRGMv2_2733_1_1196 | 1299324 | 1300592 | - | 9.A.40.2.2 |
| peptidase | HRGMv2_2733_1 | HRGMv2_2733_1_1197 | 1300775 | 1301500 | + | S14.UPW |
| pfam | HRGMv2_2733_1 | HRGMv2_2733_1_1198 | 1301533 | 1302483 | + | BacA |
| TC | HRGMv2_2733_1 | HRGMv2_2733_1_1199 | 1302501 | 1305179 | + | 3.A.12.1.1 |
Gene ID: HRGMv2_2733_1_1195
Type: CAZyme
Location: 1297594 - 1298349 (-)
Type: CAZyme
Location: 1297594 - 1298349 (-)
Gene ID: HRGMv2_2733_1_1196
Type: TC
Location: 1299324 - 1300592 (-)
Type: TC
Location: 1299324 - 1300592 (-)
Gene ID: HRGMv2_2733_1_1197
Type: peptidase
Location: 1300775 - 1301500 (+)
Type: peptidase
Location: 1300775 - 1301500 (+)
Gene ID: HRGMv2_2733_1_1198
Type: pfam
Location: 1301533 - 1302483 (+)
Type: pfam
Location: 1301533 - 1302483 (+)
Gene ID: HRGMv2_2733_1_1199
Type: TC
Location: 1302501 - 1305179 (+)
Type: TC
Location: 1302501 - 1305179 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Ruminococcus_E
Species
Ruminococcus_E sp934476515
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2733_1_1197 | vegan > omnivore | 19.46926 | 0.00224 |
| HRGMv2_2733_1_1199 | vegan > omnivore | 2.72908 | 0.00224 |