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Cluster: HRGMv2_2733_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2733_1 HRGMv2_2733_1_620 677114 678388 + 3.A.1.1.27
TC HRGMv2_2733_1 HRGMv2_2733_1_621 678491 679993 + 3.A.1.1.27
TC HRGMv2_2733_1 HRGMv2_2733_1_622 679990 680844 + 3.A.1.1.27
CAZyme HRGMv2_2733_1 HRGMv2_2733_1_623 681075 682691 + GH13_36
STP HRGMv2_2733_1 HRGMv2_2733_1_624 682893 685214 + SpoIIE
CAZyme HRGMv2_2733_1 HRGMv2_2733_1_625 685254 686426 - GT28
pfam HRGMv2_2733_1 HRGMv2_2733_1_626 686701 688527 + VanW | PG_binding_4
CAZyme HRGMv2_2733_1 HRGMv2_2733_1_627 688747 690939 + CBM74
NULL(UNKNOWN) HRGMv2_2733_1 HRGMv2_2733_1_628 691145 692386 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2733_1 HRGMv2_2733_1_629 692450 693460 + 9.A.11.1.1
Gene ID: HRGMv2_2733_1_620
Type: TC
Location: 677114 - 678388 (+)
Gene ID: HRGMv2_2733_1_621
Type: TC
Location: 678491 - 679993 (+)
Gene ID: HRGMv2_2733_1_622
Type: TC
Location: 679990 - 680844 (+)
Gene ID: HRGMv2_2733_1_623
Type: CAZyme
Location: 681075 - 682691 (+)
Gene ID: HRGMv2_2733_1_624
Type: STP
Location: 682893 - 685214 (+)
Gene ID: HRGMv2_2733_1_625
Type: CAZyme
Location: 685254 - 686426 (-)
Gene ID: HRGMv2_2733_1_626
Type: pfam
Location: 686701 - 688527 (+)
Gene ID: HRGMv2_2733_1_627
Type: CAZyme
Location: 688747 - 690939 (+)
Gene ID: HRGMv2_2733_1_628
Type:
Location: 691145 - 692386 (+)
Gene ID: HRGMv2_2733_1_629
Type: TC
Location: 692450 - 693460 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2733_1_628 vegan > omnivore 19.36060 0.00224

🧭 Explore Read Mapping of CGC

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