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Cluster: HRGMv2_2733_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2733_1 HRGMv2_2733_1_2306 2395600 2396190 - 2.A.107.1.2
pfam HRGMv2_2733_1 HRGMv2_2733_1_2307 2396313 2396732 - 4HBT | 4HBT_2
TC HRGMv2_2733_1 HRGMv2_2733_1_2308 2396737 2398398 - 4.C.1.1.4
pfam HRGMv2_2733_1 HRGMv2_2733_1_2309 2398451 2399674 - Thiolase_N | ketoacyl-synt | Ketoacyl-synt_C
TF HRGMv2_2733_1 HRGMv2_2733_1_2310 2399942 2400832 + HTH_1
TC HRGMv2_2733_1 HRGMv2_2733_1_2311 2401456 2402250 - 3.A.1.34.1
TC HRGMv2_2733_1 HRGMv2_2733_1_2312 2402243 2403166 - 3.A.1.34.1
pfam HRGMv2_2733_1 HRGMv2_2733_1_2313 2403620 2404612 - ABC_sub_bind
pfam HRGMv2_2733_1 HRGMv2_2733_1_2314 2404616 2405725 - Fe-ADH | Fe-ADH_2
CAZyme HRGMv2_2733_1 HRGMv2_2733_1_2315 2406037 2406978 - GT2
STP HRGMv2_2733_1 HRGMv2_2733_1_2316 2407201 2407614 + CBS
CAZyme HRGMv2_2733_1 HRGMv2_2733_1_2317 2407697 2409607 - GH13_36
TC HRGMv2_2733_1 HRGMv2_2733_1_2318 2409823 2411871 + 3.A.10.1.5
CAZyme HRGMv2_2733_1 HRGMv2_2733_1_2319 2412146 2415178 + CBM26 | GH13_19
TC HRGMv2_2733_1 HRGMv2_2733_1_2320 2415357 2416715 - 2.A.66.1.33
Gene ID: HRGMv2_2733_1_2306
Type: TC
Location: 2395600 - 2396190 (-)
Gene ID: HRGMv2_2733_1_2307
Type: pfam
Location: 2396313 - 2396732 (-)
Gene ID: HRGMv2_2733_1_2308
Type: TC
Location: 2396737 - 2398398 (-)
Gene ID: HRGMv2_2733_1_2309
Type: pfam
Location: 2398451 - 2399674 (-)
Gene ID: HRGMv2_2733_1_2310
Type: TF
Location: 2399942 - 2400832 (+)
Gene ID: HRGMv2_2733_1_2311
Type: TC
Location: 2401456 - 2402250 (-)
Gene ID: HRGMv2_2733_1_2312
Type: TC
Location: 2402243 - 2403166 (-)
Gene ID: HRGMv2_2733_1_2313
Type: pfam
Location: 2403620 - 2404612 (-)
Gene ID: HRGMv2_2733_1_2314
Type: pfam
Location: 2404616 - 2405725 (-)
Gene ID: HRGMv2_2733_1_2315
Type: CAZyme
Location: 2406037 - 2406978 (-)
Gene ID: HRGMv2_2733_1_2316
Type: STP
Location: 2407201 - 2407614 (+)
Gene ID: HRGMv2_2733_1_2317
Type: CAZyme
Location: 2407697 - 2409607 (-)
Gene ID: HRGMv2_2733_1_2318
Type: TC
Location: 2409823 - 2411871 (+)
Gene ID: HRGMv2_2733_1_2319
Type: CAZyme
Location: 2412146 - 2415178 (+)
Gene ID: HRGMv2_2733_1_2320
Type: TC
Location: 2415357 - 2416715 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2733_1_2316 vegan > omnivore 4.88404 0.00224

🧭 Explore Read Mapping of CGC

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