Cluster: HRGMv2_2733_CGC1
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 11
- Substrate:
- Genome ID: HRGMv2_2733
- CGC Family ID: CGCFAM_00006
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2733_1 | HRGMv2_2733_1_22 | 22554 | 23531 | - | GT2 |
| CAZyme | HRGMv2_2733_1 | HRGMv2_2733_1_23 | 23548 | 24498 | - | GT2 |
| CAZyme | HRGMv2_2733_1 | HRGMv2_2733_1_24 | 24508 | 25521 | - | GT32 |
| pfam | HRGMv2_2733_1 | HRGMv2_2733_1_25 | 25558 | 26649 | - | PS_pyruv_trans |
| pfam | HRGMv2_2733_1 | HRGMv2_2733_1_26 | 26663 | 28198 | - | Polysacc_synt | Polysacc_synt_3 |
| CAZyme | HRGMv2_2733_1 | HRGMv2_2733_1_27 | 28230 | 29201 | - | GT2 |
| CAZyme | HRGMv2_2733_1 | HRGMv2_2733_1_28 | 29203 | 30201 | - | GT2 |
| pfam | HRGMv2_2733_1 | HRGMv2_2733_1_29 | 30212 | 30736 | - | Hexapep | Hexapep_2 |
| CAZyme | HRGMv2_2733_1 | HRGMv2_2733_1_30 | 30777 | 31889 | - | GT4 |
| CAZyme | HRGMv2_2733_1 | HRGMv2_2733_1_31 | 31886 | 32899 | - | GT2 |
| CAZyme | HRGMv2_2733_1 | HRGMv2_2733_1_32 | 32896 | 33789 | - | GT2 |
| CAZyme | HRGMv2_2733_1 | HRGMv2_2733_1_33 | 33794 | 34774 | - | GT2 |
| pfam | HRGMv2_2733_1 | HRGMv2_2733_1_34 | 34786 | 35934 | - | EpsG |
| CAZyme | HRGMv2_2733_1 | HRGMv2_2733_1_35 | 35931 | 37043 | - | GT4 |
| pfam | HRGMv2_2733_1 | HRGMv2_2733_1_36 | 37109 | 37591 | - | Glyco_transf_4 |
| CAZyme | HRGMv2_2733_1 | HRGMv2_2733_1_37 | 37602 | 38693 | - | GT4 |
| TC | HRGMv2_2733_1 | HRGMv2_2733_1_38 | 38710 | 39351 | - | 9.B.18.1.3 |
| pfam | HRGMv2_2733_1 | HRGMv2_2733_1_39 | 39567 | 40436 | - | rve | rve_3 |
| TC | HRGMv2_2733_1 | HRGMv2_2733_1_40 | 40800 | 43256 | - | 3.A.9.1.2 |
Gene ID: HRGMv2_2733_1_22
Type: CAZyme
Location: 22554 - 23531 (-)
Type: CAZyme
Location: 22554 - 23531 (-)
Gene ID: HRGMv2_2733_1_23
Type: CAZyme
Location: 23548 - 24498 (-)
Type: CAZyme
Location: 23548 - 24498 (-)
Gene ID: HRGMv2_2733_1_24
Type: CAZyme
Location: 24508 - 25521 (-)
Type: CAZyme
Location: 24508 - 25521 (-)
Gene ID: HRGMv2_2733_1_25
Type: pfam
Location: 25558 - 26649 (-)
Type: pfam
Location: 25558 - 26649 (-)
Gene ID: HRGMv2_2733_1_26
Type: pfam
Location: 26663 - 28198 (-)
Type: pfam
Location: 26663 - 28198 (-)
Gene ID: HRGMv2_2733_1_27
Type: CAZyme
Location: 28230 - 29201 (-)
Type: CAZyme
Location: 28230 - 29201 (-)
Gene ID: HRGMv2_2733_1_28
Type: CAZyme
Location: 29203 - 30201 (-)
Type: CAZyme
Location: 29203 - 30201 (-)
Gene ID: HRGMv2_2733_1_29
Type: pfam
Location: 30212 - 30736 (-)
Type: pfam
Location: 30212 - 30736 (-)
Gene ID: HRGMv2_2733_1_30
Type: CAZyme
Location: 30777 - 31889 (-)
Type: CAZyme
Location: 30777 - 31889 (-)
Gene ID: HRGMv2_2733_1_31
Type: CAZyme
Location: 31886 - 32899 (-)
Type: CAZyme
Location: 31886 - 32899 (-)
Gene ID: HRGMv2_2733_1_32
Type: CAZyme
Location: 32896 - 33789 (-)
Type: CAZyme
Location: 32896 - 33789 (-)
Gene ID: HRGMv2_2733_1_33
Type: CAZyme
Location: 33794 - 34774 (-)
Type: CAZyme
Location: 33794 - 34774 (-)
Gene ID: HRGMv2_2733_1_34
Type: pfam
Location: 34786 - 35934 (-)
Type: pfam
Location: 34786 - 35934 (-)
Gene ID: HRGMv2_2733_1_35
Type: CAZyme
Location: 35931 - 37043 (-)
Type: CAZyme
Location: 35931 - 37043 (-)
Gene ID: HRGMv2_2733_1_36
Type: pfam
Location: 37109 - 37591 (-)
Type: pfam
Location: 37109 - 37591 (-)
Gene ID: HRGMv2_2733_1_37
Type: CAZyme
Location: 37602 - 38693 (-)
Type: CAZyme
Location: 37602 - 38693 (-)
Gene ID: HRGMv2_2733_1_38
Type: TC
Location: 38710 - 39351 (-)
Type: TC
Location: 38710 - 39351 (-)
Gene ID: HRGMv2_2733_1_39
Type: pfam
Location: 39567 - 40436 (-)
Type: pfam
Location: 39567 - 40436 (-)
Gene ID: HRGMv2_2733_1_40
Type: TC
Location: 40800 - 43256 (-)
Type: TC
Location: 40800 - 43256 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Ruminococcus_E
Species
Ruminococcus_E sp934476515
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2733_1_37 | vegan > omnivore | 18.69385 | 0.00224 |
| HRGMv2_2733_1_38 | vegan > omnivore | 3.52404 | 0.00224 |