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Cluster: HRGMv2_2728_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2728_8 HRGMv2_2728_8_22 22486 24417 + 9.B.18.2.1
pfam HRGMv2_2728_8 HRGMv2_2728_8_23 24451 25344 + Big_3 | Bact_surface_Ig-like
TC HRGMv2_2728_8 HRGMv2_2728_8_24 25356 26756 + 8.A.3.1.2
TC HRGMv2_2728_8 HRGMv2_2728_8_25 26737 28245 + 8.A.3.1.2
CAZyme HRGMv2_2728_8 HRGMv2_2728_8_26 28254 30119 + GT4
pfam HRGMv2_2728_8 HRGMv2_2728_8_27 30139 31242 + EpsG
CAZyme HRGMv2_2728_8 HRGMv2_2728_8_28 31253 32341 + GT4
CAZyme HRGMv2_2728_8 HRGMv2_2728_8_29 32334 33236 + GT2
pfam HRGMv2_2728_8 HRGMv2_2728_8_30 33229 34230 + DUF6625
CAZyme HRGMv2_2728_8 HRGMv2_2728_8_31 34978 36090 + GT4
CAZyme HRGMv2_2728_8 HRGMv2_2728_8_32 36102 37091 + GT2
CAZyme HRGMv2_2728_8 HRGMv2_2728_8_33 37103 38062 + GT2
CAZyme HRGMv2_2728_8 HRGMv2_2728_8_34 38064 39005 + GT2
pfam HRGMv2_2728_8 HRGMv2_2728_8_35 39022 39627 + DUF1919
CAZyme HRGMv2_2728_8 HRGMv2_2728_8_36 39648 41459 + GT32
CAZyme HRGMv2_2728_8 HRGMv2_2728_8_37 41487 42593 + GT2
TC HRGMv2_2728_8 HRGMv2_2728_8_38 42590 44152 + 2.A.66.1.40
Gene ID: HRGMv2_2728_8_22
Type: TC
Location: 22486 - 24417 (+)
Gene ID: HRGMv2_2728_8_23
Type: pfam
Location: 24451 - 25344 (+)
Gene ID: HRGMv2_2728_8_24
Type: TC
Location: 25356 - 26756 (+)
Gene ID: HRGMv2_2728_8_25
Type: TC
Location: 26737 - 28245 (+)
Gene ID: HRGMv2_2728_8_26
Type: CAZyme
Location: 28254 - 30119 (+)
Gene ID: HRGMv2_2728_8_27
Type: pfam
Location: 30139 - 31242 (+)
Gene ID: HRGMv2_2728_8_28
Type: CAZyme
Location: 31253 - 32341 (+)
Gene ID: HRGMv2_2728_8_29
Type: CAZyme
Location: 32334 - 33236 (+)
Gene ID: HRGMv2_2728_8_30
Type: pfam
Location: 33229 - 34230 (+)
Gene ID: HRGMv2_2728_8_31
Type: CAZyme
Location: 34978 - 36090 (+)
Gene ID: HRGMv2_2728_8_32
Type: CAZyme
Location: 36102 - 37091 (+)
Gene ID: HRGMv2_2728_8_33
Type: CAZyme
Location: 37103 - 38062 (+)
Gene ID: HRGMv2_2728_8_34
Type: CAZyme
Location: 38064 - 39005 (+)
Gene ID: HRGMv2_2728_8_35
Type: pfam
Location: 39022 - 39627 (+)
Gene ID: HRGMv2_2728_8_36
Type: CAZyme
Location: 39648 - 41459 (+)
Gene ID: HRGMv2_2728_8_37
Type: CAZyme
Location: 41487 - 42593 (+)
Gene ID: HRGMv2_2728_8_38
Type: TC
Location: 42590 - 44152 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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