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Cluster: HRGMv2_2728_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2728_43 HRGMv2_2728_43_8 5476 6864 + 3.B.1.1.6
pfam HRGMv2_2728_43 HRGMv2_2728_43_9 6876 7211 + OAD_gamma
TC HRGMv2_2728_43 HRGMv2_2728_43_10 7230 7622 + 3.B.1.1.1
TC HRGMv2_2728_43 HRGMv2_2728_43_11 7638 8795 + 3.B.1.1.3
pfam HRGMv2_2728_43 HRGMv2_2728_43_12 8920 9462 + Metallophos | Metallophos_2
pfam HRGMv2_2728_43 HRGMv2_2728_43_13 9482 10816 + AcetylCoA_hydro | AcetylCoA_hyd_C
CAZyme HRGMv2_2728_43 HRGMv2_2728_43_14 10852 12018 - GH3
TF HRGMv2_2728_43 HRGMv2_2728_43_15 12040 12516 - FMN_bind_2
pfam HRGMv2_2728_43 HRGMv2_2728_43_16 12597 13832 - ABC2_membrane_2 | ABC2_membrane_3
TC HRGMv2_2728_43 HRGMv2_2728_43_17 13836 14714 - 3.A.1.148.3
Gene ID: HRGMv2_2728_43_8
Type: TC
Location: 5476 - 6864 (+)
Gene ID: HRGMv2_2728_43_9
Type: pfam
Location: 6876 - 7211 (+)
Gene ID: HRGMv2_2728_43_10
Type: TC
Location: 7230 - 7622 (+)
Gene ID: HRGMv2_2728_43_11
Type: TC
Location: 7638 - 8795 (+)
Gene ID: HRGMv2_2728_43_12
Type: pfam
Location: 8920 - 9462 (+)
Gene ID: HRGMv2_2728_43_13
Type: pfam
Location: 9482 - 10816 (+)
Gene ID: HRGMv2_2728_43_14
Type: CAZyme
Location: 10852 - 12018 (-)
Gene ID: HRGMv2_2728_43_15
Type: TF
Location: 12040 - 12516 (-)
Gene ID: HRGMv2_2728_43_16
Type: pfam
Location: 12597 - 13832 (-)
Gene ID: HRGMv2_2728_43_17
Type: TC
Location: 13836 - 14714 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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