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Cluster: HRGMv2_2728_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2728_23 HRGMv2_2728_23_11 10267 11283 + GH177
TC HRGMv2_2728_23 HRGMv2_2728_23_12 11346 11945 + 2.A.115.2.14
TC HRGMv2_2728_23 HRGMv2_2728_23_13 11947 13323 + 2.A.2.3.3
pfam HRGMv2_2728_23 HRGMv2_2728_23_14 13341 14171 + AP_endonuc_2
TC HRGMv2_2728_23 HRGMv2_2728_23_15 14236 16416 - 9.B.74.1.1
TC HRGMv2_2728_23 HRGMv2_2728_23_16 16413 18953 - 9.B.74.1.1
NULL(UNKNOWN) HRGMv2_2728_23 HRGMv2_2728_23_17 19228 19323 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2728_23 HRGMv2_2728_23_18 19278 19640 + 9.B.55.2.1
Gene ID: HRGMv2_2728_23_11
Type: CAZyme
Location: 10267 - 11283 (+)
Gene ID: HRGMv2_2728_23_12
Type: TC
Location: 11346 - 11945 (+)
Gene ID: HRGMv2_2728_23_13
Type: TC
Location: 11947 - 13323 (+)
Gene ID: HRGMv2_2728_23_14
Type: pfam
Location: 13341 - 14171 (+)
Gene ID: HRGMv2_2728_23_15
Type: TC
Location: 14236 - 16416 (-)
Gene ID: HRGMv2_2728_23_16
Type: TC
Location: 16413 - 18953 (-)
Gene ID: HRGMv2_2728_23_17
Type:
Location: 19228 - 19323 (+)
Gene ID: HRGMv2_2728_23_18
Type: TC
Location: 19278 - 19640 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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