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Cluster: HRGMv2_2721_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2721_16 HRGMv2_2721_16_23 21238 22608 + 2.A.66.1.33
pfam HRGMv2_2721_16 HRGMv2_2721_16_24 22601 23962 + MMR_HSR1 | FeoB_N | TrmE_N | MnmE_helical
CAZyme HRGMv2_2721_16 HRGMv2_2721_16_25 24003 27284 - GT4
NULL(UNKNOWN) HRGMv2_2721_16 HRGMv2_2721_16_26 27288 27707 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_2721_16 HRGMv2_2721_16_27 27719 28219 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2721_16 HRGMv2_2721_16_28 28216 30732 - GT4
pfam HRGMv2_2721_16 HRGMv2_2721_16_29 30906 32381 + O-antigen_lig
CAZyme HRGMv2_2721_16 HRGMv2_2721_16_30 32378 33349 + GT2
TF HRGMv2_2721_16 HRGMv2_2721_16_31 33387 33830 - Rrf2
pfam HRGMv2_2721_16 HRGMv2_2721_16_32 34293 39680 + SLH | SLH | SLH | Big_2 | Flg_new_2 | Flg_new_2 | Flg_new_2 | Flg_new_2 | Flg_new_2 | Pectate_lyase_5
TC HRGMv2_2721_16 HRGMv2_2721_16_33 39936 41669 + 3.A.1.106.12
TC HRGMv2_2721_16 HRGMv2_2721_16_34 41666 43324 + 3.A.1.106.11
pfam HRGMv2_2721_16 HRGMv2_2721_16_35 43324 43671 + YgbA_NO
pfam HRGMv2_2721_16 HRGMv2_2721_16_36 43668 44075 + DUF454
TC HRGMv2_2721_16 HRGMv2_2721_16_37 44857 47874 + 1.C.39.4.6
Gene ID: HRGMv2_2721_16_23
Type: TC
Location: 21238 - 22608 (+)
Gene ID: HRGMv2_2721_16_24
Type: pfam
Location: 22601 - 23962 (+)
Gene ID: HRGMv2_2721_16_25
Type: CAZyme
Location: 24003 - 27284 (-)
Gene ID: HRGMv2_2721_16_26
Type:
Location: 27288 - 27707 (-)
Gene ID: HRGMv2_2721_16_27
Type:
Location: 27719 - 28219 (-)
Gene ID: HRGMv2_2721_16_28
Type: CAZyme
Location: 28216 - 30732 (-)
Gene ID: HRGMv2_2721_16_29
Type: pfam
Location: 30906 - 32381 (+)
Gene ID: HRGMv2_2721_16_30
Type: CAZyme
Location: 32378 - 33349 (+)
Gene ID: HRGMv2_2721_16_31
Type: TF
Location: 33387 - 33830 (-)
Gene ID: HRGMv2_2721_16_32
Type: pfam
Location: 34293 - 39680 (+)
Gene ID: HRGMv2_2721_16_33
Type: TC
Location: 39936 - 41669 (+)
Gene ID: HRGMv2_2721_16_34
Type: TC
Location: 41666 - 43324 (+)
Gene ID: HRGMv2_2721_16_35
Type: pfam
Location: 43324 - 43671 (+)
Gene ID: HRGMv2_2721_16_36
Type: pfam
Location: 43668 - 44075 (+)
Gene ID: HRGMv2_2721_16_37
Type: TC
Location: 44857 - 47874 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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