Cluster: HRGMv2_2717_CGC6
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2717
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2717_5 | HRGMv2_2717_5_59 | 62502 | 63902 | + | 2.A.22.5.3 |
| NULL(UNKNOWN) | HRGMv2_2717_5 | HRGMv2_2717_5_60 | 64012 | 64437 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2717_5 | HRGMv2_2717_5_61 | 64514 | 68098 | - | SLH | SLH | SLH |
| TC | HRGMv2_2717_5 | HRGMv2_2717_5_62 | 68331 | 69725 | - | 1.A.26.1.3 |
| pfam | HRGMv2_2717_5 | HRGMv2_2717_5_63 | 70169 | 70750 | + | ATC_hydrolase |
| NULL(UNKNOWN) | HRGMv2_2717_5 | HRGMv2_2717_5_64 | 70778 | 71077 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2717_5 | HRGMv2_2717_5_65 | 71103 | 72275 | + | GH179 |
| TF | HRGMv2_2717_5 | HRGMv2_2717_5_66 | 72335 | 73240 | - | HTH_1 |
| TF | HRGMv2_2717_5 | HRGMv2_2717_5_67 | 73527 | 74243 | + | GntR |
| TC | HRGMv2_2717_5 | HRGMv2_2717_5_68 | 74326 | 74562 | + | 3.A.1.2.19 |
Gene ID: HRGMv2_2717_5_59
Type: TC
Location: 62502 - 63902 (+)
Type: TC
Location: 62502 - 63902 (+)
Gene ID: HRGMv2_2717_5_60
Type:
Location: 64012 - 64437 (-)
Type:
Location: 64012 - 64437 (-)
Gene ID: HRGMv2_2717_5_61
Type: pfam
Location: 64514 - 68098 (-)
Type: pfam
Location: 64514 - 68098 (-)
Gene ID: HRGMv2_2717_5_62
Type: TC
Location: 68331 - 69725 (-)
Type: TC
Location: 68331 - 69725 (-)
Gene ID: HRGMv2_2717_5_63
Type: pfam
Location: 70169 - 70750 (+)
Type: pfam
Location: 70169 - 70750 (+)
Gene ID: HRGMv2_2717_5_64
Type:
Location: 70778 - 71077 (+)
Type:
Location: 70778 - 71077 (+)
Gene ID: HRGMv2_2717_5_65
Type: CAZyme
Location: 71103 - 72275 (+)
Type: CAZyme
Location: 71103 - 72275 (+)
Gene ID: HRGMv2_2717_5_66
Type: TF
Location: 72335 - 73240 (-)
Type: TF
Location: 72335 - 73240 (-)
Gene ID: HRGMv2_2717_5_67
Type: TF
Location: 73527 - 74243 (+)
Type: TF
Location: 73527 - 74243 (+)
Gene ID: HRGMv2_2717_5_68
Type: TC
Location: 74326 - 74562 (+)
Type: TC
Location: 74326 - 74562 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Butyricicoccaceae
Genus
Agathobaculum
Species
Agathobaculum hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2717_5_60 | vegetarian > omnivore | 1.17670 | 0.00629 |
| HRGMv2_2717_5_61 | vegetarian > omnivore | 1.25479 | 0.00629 |
| HRGMv2_2717_5_63 | vegetarian > omnivore | 1.16080 | 0.00629 |
| HRGMv2_2717_5_64 | vegetarian > omnivore | 1.48639 | 0.00629 |
| HRGMv2_2717_5_67 | vegetarian > omnivore | 1.48533 | 0.00629 |
| HRGMv2_2717_5_68 | vegetarian > omnivore | 1.15953 | 0.00629 |