dbCAN HGM

Cluster: HRGMv2_2717_CGC5

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_2717_3	HRGMv2_2717_3_84	79802	82315	+	9.A.8.1.6
pfam	HRGMv2_2717_3	HRGMv2_2717_3_85	82344	82493	+	FeoB_associated
CAZyme	HRGMv2_2717_3	HRGMv2_2717_3_86	82643	83881	+	GH18
pfam	HRGMv2_2717_3	HRGMv2_2717_3_87	84264	84977	-	Resolvase \| Recombinase
TC	HRGMv2_2717_3	HRGMv2_2717_3_88	85327	86151	-	8.A.5.1.4
TF	HRGMv2_2717_3	HRGMv2_2717_3_89	86299	87078	+	HTH_1
pfam	HRGMv2_2717_3	HRGMv2_2717_3_90	87090	89018	+	UvrA_DNA-bind
TC	HRGMv2_2717_3	HRGMv2_2717_3_91	89142	89579	+	3.A.1.3.13

Gene ID: HRGMv2_2717_3_84
Type: TC
Location: 79802 - 82315 (+)

Gene ID: HRGMv2_2717_3_85
Type: pfam
Location: 82344 - 82493 (+)

Gene ID: HRGMv2_2717_3_86
Type: CAZyme
Location: 82643 - 83881 (+)

Gene ID: HRGMv2_2717_3_87
Type: pfam
Location: 84264 - 84977 (-)

Gene ID: HRGMv2_2717_3_88
Type: TC
Location: 85327 - 86151 (-)

Gene ID: HRGMv2_2717_3_89
Type: TF
Location: 86299 - 87078 (+)

Gene ID: HRGMv2_2717_3_90
Type: pfam
Location: 87090 - 89018 (+)

Gene ID: HRGMv2_2717_3_91
Type: TC
Location: 89142 - 89579 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_2717_3_85	vegetarian > omnivore	1.39117	0.00629
HRGMv2_2717_3_86	vegetarian > omnivore	1.90916	0.00629
HRGMv2_2717_3_87	vegetarian > vegan	1.82133	0.00701
HRGMv2_2717_3_89	vegetarian > omnivore	1.35391	0.00629

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_2717_3_86	vegan > flexitarian	1.36660	0.00364