Cluster: HRGMv2_2717_CGC14
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2717
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2717_19 | HRGMv2_2717_19_9 | 7907 | 9187 | - | 2.A.26.1.1 |
| STP | HRGMv2_2717_19 | HRGMv2_2717_19_10 | 9338 | 10300 | - | PfkB |
| pfam | HRGMv2_2717_19 | HRGMv2_2717_19_11 | 10297 | 11172 | - | Hydrolase | S6PP | S6PP | Hydrolase_3 |
| CAZyme | HRGMv2_2717_19 | HRGMv2_2717_19_12 | 11156 | 12562 | - | GH32 |
| pfam | HRGMv2_2717_19 | HRGMv2_2717_19_13 | 12634 | 14004 | - | Mur_ligase | Mur_ligase_C | Mur_ligase_M |
| CAZyme | HRGMv2_2717_19 | HRGMv2_2717_19_14 | 14308 | 15438 | + | GT28 |
Gene ID: HRGMv2_2717_19_9
Type: TC
Location: 7907 - 9187 (-)
Type: TC
Location: 7907 - 9187 (-)
Gene ID: HRGMv2_2717_19_10
Type: STP
Location: 9338 - 10300 (-)
Type: STP
Location: 9338 - 10300 (-)
Gene ID: HRGMv2_2717_19_11
Type: pfam
Location: 10297 - 11172 (-)
Type: pfam
Location: 10297 - 11172 (-)
Gene ID: HRGMv2_2717_19_12
Type: CAZyme
Location: 11156 - 12562 (-)
Type: CAZyme
Location: 11156 - 12562 (-)
Gene ID: HRGMv2_2717_19_13
Type: pfam
Location: 12634 - 14004 (-)
Type: pfam
Location: 12634 - 14004 (-)
Gene ID: HRGMv2_2717_19_14
Type: CAZyme
Location: 14308 - 15438 (+)
Type: CAZyme
Location: 14308 - 15438 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Butyricicoccaceae
Genus
Agathobaculum
Species
Agathobaculum hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2717_19_10 | vegetarian > omnivore | 1.30650 | 0.00629 |
| HRGMv2_2717_19_11 | vegetarian > omnivore | 1.44952 | 0.00629 |
| HRGMv2_2717_19_12 | vegetarian > omnivore | 1.23601 | 0.00629 |