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Cluster: HRGMv2_2717_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2717_17 HRGMv2_2717_17_17 16774 19263 - 3.A.7.7.1
TC HRGMv2_2717_17 HRGMv2_2717_17_18 19368 20573 - 3.A.11.1.3
pfam HRGMv2_2717_17 HRGMv2_2717_17_19 20588 21355 - SpoU_methylase | MRM3-like_sub_bind
TC HRGMv2_2717_17 HRGMv2_2717_17_20 21352 22008 - 2.A.38.4.6
TC HRGMv2_2717_17 HRGMv2_2717_17_21 22067 23434 - 2.A.38.4.1
TC HRGMv2_2717_17 HRGMv2_2717_17_22 23919 24716 - 3.A.1.34.1
TC HRGMv2_2717_17 HRGMv2_2717_17_23 24710 25579 - 3.A.1.34.1
pfam HRGMv2_2717_17 HRGMv2_2717_17_24 25610 26614 - ABC_sub_bind | Peripla_BP_4
pfam HRGMv2_2717_17 HRGMv2_2717_17_25 27070 27366 + Dabb
CAZyme HRGMv2_2717_17 HRGMv2_2717_17_26 27671 28780 - CE9
sulfatase HRGMv2_2717_17 HRGMv2_2717_17_27 28792 29529 - S1_9
TC HRGMv2_2717_17 HRGMv2_2717_17_28 29651 31150 - 4.A.1.1.7
STP HRGMv2_2717_17 HRGMv2_2717_17_29 31320 31577 - PTS-HPr
TC HRGMv2_2717_17 HRGMv2_2717_17_30 31595 32110 - 4.A.1.2.11
Gene ID: HRGMv2_2717_17_17
Type: TC
Location: 16774 - 19263 (-)
Gene ID: HRGMv2_2717_17_18
Type: TC
Location: 19368 - 20573 (-)
Gene ID: HRGMv2_2717_17_19
Type: pfam
Location: 20588 - 21355 (-)
Gene ID: HRGMv2_2717_17_20
Type: TC
Location: 21352 - 22008 (-)
Gene ID: HRGMv2_2717_17_21
Type: TC
Location: 22067 - 23434 (-)
Gene ID: HRGMv2_2717_17_22
Type: TC
Location: 23919 - 24716 (-)
Gene ID: HRGMv2_2717_17_23
Type: TC
Location: 24710 - 25579 (-)
Gene ID: HRGMv2_2717_17_24
Type: pfam
Location: 25610 - 26614 (-)
Gene ID: HRGMv2_2717_17_25
Type: pfam
Location: 27070 - 27366 (+)
Gene ID: HRGMv2_2717_17_26
Type: CAZyme
Location: 27671 - 28780 (-)
Gene ID: HRGMv2_2717_17_27
Type: sulfatase
Location: 28792 - 29529 (-)
Gene ID: HRGMv2_2717_17_28
Type: TC
Location: 29651 - 31150 (-)
Gene ID: HRGMv2_2717_17_29
Type: STP
Location: 31320 - 31577 (-)
Gene ID: HRGMv2_2717_17_30
Type: TC
Location: 31595 - 32110 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2717_17_18 vegetarian > omnivore 1.22755 0.00629
HRGMv2_2717_17_20 vegetarian > omnivore 1.64086 0.00629
HRGMv2_2717_17_23 vegetarian > omnivore 1.71800 0.00629
HRGMv2_2717_17_24 vegetarian > omnivore 1.59578 0.00629
HRGMv2_2717_17_25 vegetarian > omnivore 1.48867 0.00629
HRGMv2_2717_17_25 vegetarian > vegan 1.07734 0.01260
HRGMv2_2717_17_29 vegetarian > omnivore 1.09869 0.00629
HRGMv2_2717_17_30 vegetarian > omnivore 1.19565 0.00629

🧭 Explore Read Mapping of CGC

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