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Cluster: HRGMv2_2714_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2714_1 HRGMv2_2714_1_442 503418 504113 + 9.B.18.1.3
TC HRGMv2_2714_1 HRGMv2_2714_1_443 504116 505054 + 8.A.5.1.4
pfam HRGMv2_2714_1 HRGMv2_2714_1_444 505051 506004 + Transketolase_N | E1_dh | DXP_synthase_N
pfam HRGMv2_2714_1 HRGMv2_2714_1_445 506001 506918 + Transket_pyr | Transketolase_C
CAZyme HRGMv2_2714_1 HRGMv2_2714_1_446 506915 508030 + GT4
CAZyme HRGMv2_2714_1 HRGMv2_2714_1_447 508510 509184 + GT4
CAZyme HRGMv2_2714_1 HRGMv2_2714_1_448 509141 510034 + GT2
NULL(UNKNOWN) HRGMv2_2714_1 HRGMv2_2714_1_449 510036 510158 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2714_1 HRGMv2_2714_1_450 510155 511252 + GT4
CAZyme HRGMv2_2714_1 HRGMv2_2714_1_451 511249 512361 + GT4
pfam HRGMv2_2714_1 HRGMv2_2714_1_452 512371 513486 + EpsG
CAZyme HRGMv2_2714_1 HRGMv2_2714_1_453 513483 514463 + GT2
pfam HRGMv2_2714_1 HRGMv2_2714_1_454 514511 515548 + Acyl_transf_3
TC HRGMv2_2714_1 HRGMv2_2714_1_455 515559 516515 + 9.B.97.6.2
pfam HRGMv2_2714_1 HRGMv2_2714_1_456 516526 517527 + Stealth_CR2 | Stealth_CR1 | Stealth_CR3
CAZyme HRGMv2_2714_1 HRGMv2_2714_1_457 517524 518699 + GT4
TC HRGMv2_2714_1 HRGMv2_2714_1_458 518717 519583 + 3.A.1.103.6
TC HRGMv2_2714_1 HRGMv2_2714_1_459 519593 520876 + 3.A.1.103.5
Gene ID: HRGMv2_2714_1_442
Type: TC
Location: 503418 - 504113 (+)
Gene ID: HRGMv2_2714_1_443
Type: TC
Location: 504116 - 505054 (+)
Gene ID: HRGMv2_2714_1_444
Type: pfam
Location: 505051 - 506004 (+)
Gene ID: HRGMv2_2714_1_445
Type: pfam
Location: 506001 - 506918 (+)
Gene ID: HRGMv2_2714_1_446
Type: CAZyme
Location: 506915 - 508030 (+)
Gene ID: HRGMv2_2714_1_447
Type: CAZyme
Location: 508510 - 509184 (+)
Gene ID: HRGMv2_2714_1_448
Type: CAZyme
Location: 509141 - 510034 (+)
Gene ID: HRGMv2_2714_1_449
Type:
Location: 510036 - 510158 (+)
Gene ID: HRGMv2_2714_1_450
Type: CAZyme
Location: 510155 - 511252 (+)
Gene ID: HRGMv2_2714_1_451
Type: CAZyme
Location: 511249 - 512361 (+)
Gene ID: HRGMv2_2714_1_452
Type: pfam
Location: 512371 - 513486 (+)
Gene ID: HRGMv2_2714_1_453
Type: CAZyme
Location: 513483 - 514463 (+)
Gene ID: HRGMv2_2714_1_454
Type: pfam
Location: 514511 - 515548 (+)
Gene ID: HRGMv2_2714_1_455
Type: TC
Location: 515559 - 516515 (+)
Gene ID: HRGMv2_2714_1_456
Type: pfam
Location: 516526 - 517527 (+)
Gene ID: HRGMv2_2714_1_457
Type: CAZyme
Location: 517524 - 518699 (+)
Gene ID: HRGMv2_2714_1_458
Type: TC
Location: 518717 - 519583 (+)
Gene ID: HRGMv2_2714_1_459
Type: TC
Location: 519593 - 520876 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Oscillospiraceae
→
Genus
CAG-103
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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