Cluster: HRGMv2_2714_CGC13
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2714
- CGC Family ID: CGCFAM_01921
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2714_1 | HRGMv2_2714_1_1816 | 1937900 | 1939117 | - | GH3 |
| TC | HRGMv2_2714_1 | HRGMv2_2714_1_1817 | 1939258 | 1940376 | + | 9.B.10.1.1 |
| pfam | HRGMv2_2714_1 | HRGMv2_2714_1_1818 | 1940369 | 1941334 | + | cobW | DUF1980_C |
| pfam | HRGMv2_2714_1 | HRGMv2_2714_1_1819 | 1941695 | 1941985 | - | HNH | HNH_2 | HNH_5 |
| TC | HRGMv2_2714_1 | HRGMv2_2714_1_1820 | 1942563 | 1943381 | - | 3.A.1.34.1 |
| TC | HRGMv2_2714_1 | HRGMv2_2714_1_1821 | 1943374 | 1944306 | - | 3.A.1.34.1 |
| TC | HRGMv2_2714_1 | HRGMv2_2714_1_1822 | 1944337 | 1945380 | - | 3.A.1.34.1 |
Gene ID: HRGMv2_2714_1_1816
Type: CAZyme
Location: 1937900 - 1939117 (-)
Type: CAZyme
Location: 1937900 - 1939117 (-)
Gene ID: HRGMv2_2714_1_1817
Type: TC
Location: 1939258 - 1940376 (+)
Type: TC
Location: 1939258 - 1940376 (+)
Gene ID: HRGMv2_2714_1_1818
Type: pfam
Location: 1940369 - 1941334 (+)
Type: pfam
Location: 1940369 - 1941334 (+)
Gene ID: HRGMv2_2714_1_1819
Type: pfam
Location: 1941695 - 1941985 (-)
Type: pfam
Location: 1941695 - 1941985 (-)
Gene ID: HRGMv2_2714_1_1820
Type: TC
Location: 1942563 - 1943381 (-)
Type: TC
Location: 1942563 - 1943381 (-)
Gene ID: HRGMv2_2714_1_1821
Type: TC
Location: 1943374 - 1944306 (-)
Type: TC
Location: 1943374 - 1944306 (-)
Gene ID: HRGMv2_2714_1_1822
Type: TC
Location: 1944337 - 1945380 (-)
Type: TC
Location: 1944337 - 1945380 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
CAG-103
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.