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Cluster: HRGMv2_2710_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2710_6 HRGMv2_2710_6_84 99373 100365 + 3.A.1.24.2
TC HRGMv2_2710_6 HRGMv2_2710_6_85 100369 101046 + 3.A.1.24.5
TC HRGMv2_2710_6 HRGMv2_2710_6_86 101194 102042 + 3.A.1.24.5
pfam HRGMv2_2710_6 HRGMv2_2710_6_87 102112 103098 - NMT1 | NMT1_2 | NMT1_2
TC HRGMv2_2710_6 HRGMv2_2710_6_88 103095 103910 - 3.A.1.17.3
TC HRGMv2_2710_6 HRGMv2_2710_6_89 103903 104661 - 3.A.1.17.8
CAZyme HRGMv2_2710_6 HRGMv2_2710_6_90 104826 105782 - CE4
TC HRGMv2_2710_6 HRGMv2_2710_6_91 105740 108382 - 3.A.3.2.28
Gene ID: HRGMv2_2710_6_84
Type: TC
Location: 99373 - 100365 (+)
Gene ID: HRGMv2_2710_6_85
Type: TC
Location: 100369 - 101046 (+)
Gene ID: HRGMv2_2710_6_86
Type: TC
Location: 101194 - 102042 (+)
Gene ID: HRGMv2_2710_6_87
Type: pfam
Location: 102112 - 103098 (-)
Gene ID: HRGMv2_2710_6_88
Type: TC
Location: 103095 - 103910 (-)
Gene ID: HRGMv2_2710_6_89
Type: TC
Location: 103903 - 104661 (-)
Gene ID: HRGMv2_2710_6_90
Type: CAZyme
Location: 104826 - 105782 (-)
Gene ID: HRGMv2_2710_6_91
Type: TC
Location: 105740 - 108382 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2710_6_88 vegetarian > omnivore 1.05232 0.00012
HRGMv2_2710_6_90 vegetarian > omnivore 1.19960 0.00012

🧭 Explore Read Mapping of CGC

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