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Cluster: HRGMv2_2708_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2708_17 HRGMv2_2708_17_16 11093 12121 + GT2
TF HRGMv2_2708_17 HRGMv2_2708_17_17 13019 13690 - GntR
peptidase HRGMv2_2708_17 HRGMv2_2708_17_18 13761 15422 - M20.UPW
TC HRGMv2_2708_17 HRGMv2_2708_17_19 16065 17129 + 2.A.56.1.2
pfam HRGMv2_2708_17 HRGMv2_2708_17_20 17269 17766 + DctQ
TC HRGMv2_2708_17 HRGMv2_2708_17_21 17763 19043 + 2.A.56.1.4
Gene ID: HRGMv2_2708_17_16
Type: CAZyme
Location: 11093 - 12121 (+)
Gene ID: HRGMv2_2708_17_17
Type: TF
Location: 13019 - 13690 (-)
Gene ID: HRGMv2_2708_17_18
Type: peptidase
Location: 13761 - 15422 (-)
Gene ID: HRGMv2_2708_17_19
Type: TC
Location: 16065 - 17129 (+)
Gene ID: HRGMv2_2708_17_20
Type: pfam
Location: 17269 - 17766 (+)
Gene ID: HRGMv2_2708_17_21
Type: TC
Location: 17763 - 19043 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Oscillospiraceae
→
Genus
Lawsonibacter
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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