Cluster: HRGMv2_2705_CGC9
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2705
- CGC Family ID: CGCFAM_06473
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2705_1 | HRGMv2_2705_1_1470 | 1513559 | 1515619 | + | CBM48 | GH13_9 |
| pfam | HRGMv2_2705_1 | HRGMv2_2705_1_1471 | 1515682 | 1516896 | + | NTP_transferase | Hexapep_GlmU |
| pfam | HRGMv2_2705_1 | HRGMv2_2705_1_1472 | 1516893 | 1518005 | + | NTP_transferase | Hexapep_GlmU |
| CAZyme | HRGMv2_2705_1 | HRGMv2_2705_1_1473 | 1518090 | 1519526 | + | GT5 |
| CAZyme | HRGMv2_2705_1 | HRGMv2_2705_1_1474 | 1519860 | 1522295 | + | GT35 |
| pfam | HRGMv2_2705_1 | HRGMv2_2705_1_1475 | 1522462 | 1522899 | + | LacAB_rpiB |
| TC | HRGMv2_2705_1 | HRGMv2_2705_1_1476 | 1523052 | 1524446 | - | 2.A.118.1.4 |
| peptidase | HRGMv2_2705_1 | HRGMv2_2705_1_1477 | 1524487 | 1525620 | - | M38.UNW |
| TC | HRGMv2_2705_1 | HRGMv2_2705_1_1478 | 1525739 | 1527142 | - | 2.A.118.1.4 |
| TF | HRGMv2_2705_1 | HRGMv2_2705_1_1479 | 1527321 | 1528064 | + | MerR |
| CAZyme | HRGMv2_2705_1 | HRGMv2_2705_1_1480 | 1528134 | 1528889 | - | CE4 |
| TC | HRGMv2_2705_1 | HRGMv2_2705_1_1481 | 1529135 | 1530553 | + | 2.A.25.1.5 |
| NULL(UNKNOWN) | HRGMv2_2705_1 | HRGMv2_2705_1_1482 | 1531037 | 1531570 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2705_1 | HRGMv2_2705_1_1483 | 1531644 | 1534382 | - | SLH | SLH |
| TC | HRGMv2_2705_1 | HRGMv2_2705_1_1484 | 1535103 | 1536386 | - | 2.A.56.1.4 |
| pfam | HRGMv2_2705_1 | HRGMv2_2705_1_1485 | 1536383 | 1536892 | - | DctQ |
| TC | HRGMv2_2705_1 | HRGMv2_2705_1_1486 | 1537035 | 1538087 | - | 2.A.56.1.2 |
Gene ID: HRGMv2_2705_1_1470
Type: CAZyme
Location: 1513559 - 1515619 (+)
Type: CAZyme
Location: 1513559 - 1515619 (+)
Gene ID: HRGMv2_2705_1_1471
Type: pfam
Location: 1515682 - 1516896 (+)
Type: pfam
Location: 1515682 - 1516896 (+)
Gene ID: HRGMv2_2705_1_1472
Type: pfam
Location: 1516893 - 1518005 (+)
Type: pfam
Location: 1516893 - 1518005 (+)
Gene ID: HRGMv2_2705_1_1473
Type: CAZyme
Location: 1518090 - 1519526 (+)
Type: CAZyme
Location: 1518090 - 1519526 (+)
Gene ID: HRGMv2_2705_1_1474
Type: CAZyme
Location: 1519860 - 1522295 (+)
Type: CAZyme
Location: 1519860 - 1522295 (+)
Gene ID: HRGMv2_2705_1_1475
Type: pfam
Location: 1522462 - 1522899 (+)
Type: pfam
Location: 1522462 - 1522899 (+)
Gene ID: HRGMv2_2705_1_1476
Type: TC
Location: 1523052 - 1524446 (-)
Type: TC
Location: 1523052 - 1524446 (-)
Gene ID: HRGMv2_2705_1_1477
Type: peptidase
Location: 1524487 - 1525620 (-)
Type: peptidase
Location: 1524487 - 1525620 (-)
Gene ID: HRGMv2_2705_1_1478
Type: TC
Location: 1525739 - 1527142 (-)
Type: TC
Location: 1525739 - 1527142 (-)
Gene ID: HRGMv2_2705_1_1479
Type: TF
Location: 1527321 - 1528064 (+)
Type: TF
Location: 1527321 - 1528064 (+)
Gene ID: HRGMv2_2705_1_1480
Type: CAZyme
Location: 1528134 - 1528889 (-)
Type: CAZyme
Location: 1528134 - 1528889 (-)
Gene ID: HRGMv2_2705_1_1481
Type: TC
Location: 1529135 - 1530553 (+)
Type: TC
Location: 1529135 - 1530553 (+)
Gene ID: HRGMv2_2705_1_1482
Type:
Location: 1531037 - 1531570 (+)
Type:
Location: 1531037 - 1531570 (+)
Gene ID: HRGMv2_2705_1_1483
Type: pfam
Location: 1531644 - 1534382 (-)
Type: pfam
Location: 1531644 - 1534382 (-)
Gene ID: HRGMv2_2705_1_1484
Type: TC
Location: 1535103 - 1536386 (-)
Type: TC
Location: 1535103 - 1536386 (-)
Gene ID: HRGMv2_2705_1_1485
Type: pfam
Location: 1536383 - 1536892 (-)
Type: pfam
Location: 1536383 - 1536892 (-)
Gene ID: HRGMv2_2705_1_1486
Type: TC
Location: 1537035 - 1538087 (-)
Type: TC
Location: 1537035 - 1538087 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Lawsonibacter
Species
Lawsonibacter sp900066825
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.