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Cluster: HRGMv2_2703_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2703_5 HRGMv2_2703_5_83 87036 88706 + 2.A.21.3.21
STP HRGMv2_2703_5 HRGMv2_2703_5_84 88974 90332 - GGDEF
TF HRGMv2_2703_5 HRGMv2_2703_5_85 90576 92168 - HTH_AraC | HTH_AraC
TC HRGMv2_2703_5 HRGMv2_2703_5_86 92162 93862 - 8.A.59.2.1
TC HRGMv2_2703_5 HRGMv2_2703_5_87 94202 95521 + 3.A.1.1.20
TC HRGMv2_2703_5 HRGMv2_2703_5_88 95593 96465 + 3.A.1.1.47
TC HRGMv2_2703_5 HRGMv2_2703_5_89 96481 97332 + 3.A.1.1.47
TC HRGMv2_2703_5 HRGMv2_2703_5_90 97348 98448 + 3.A.1.1.24
pfam HRGMv2_2703_5 HRGMv2_2703_5_91 98463 99107 + DUF624
CAZyme HRGMv2_2703_5 HRGMv2_2703_5_92 99124 100491 + GH4
STP HRGMv2_2703_5 HRGMv2_2703_5_93 100495 101406 + PfkB
sulfatase HRGMv2_2703_5 HRGMv2_2703_5_94 101428 102165 + S1_9
TC HRGMv2_2703_5 HRGMv2_2703_5_95 102316 103668 + 2.A.66.1.33
Gene ID: HRGMv2_2703_5_83
Type: TC
Location: 87036 - 88706 (+)
Gene ID: HRGMv2_2703_5_84
Type: STP
Location: 88974 - 90332 (-)
Gene ID: HRGMv2_2703_5_85
Type: TF
Location: 90576 - 92168 (-)
Gene ID: HRGMv2_2703_5_86
Type: TC
Location: 92162 - 93862 (-)
Gene ID: HRGMv2_2703_5_87
Type: TC
Location: 94202 - 95521 (+)
Gene ID: HRGMv2_2703_5_88
Type: TC
Location: 95593 - 96465 (+)
Gene ID: HRGMv2_2703_5_89
Type: TC
Location: 96481 - 97332 (+)
Gene ID: HRGMv2_2703_5_90
Type: TC
Location: 97348 - 98448 (+)
Gene ID: HRGMv2_2703_5_91
Type: pfam
Location: 98463 - 99107 (+)
Gene ID: HRGMv2_2703_5_92
Type: CAZyme
Location: 99124 - 100491 (+)
Gene ID: HRGMv2_2703_5_93
Type: STP
Location: 100495 - 101406 (+)
Gene ID: HRGMv2_2703_5_94
Type: sulfatase
Location: 101428 - 102165 (+)
Gene ID: HRGMv2_2703_5_95
Type: TC
Location: 102316 - 103668 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2703_5_83 vegan > omnivore 1.31491 0.00701

🧭 Explore Read Mapping of CGC

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