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Cluster: HRGMv2_2703_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2703_4 HRGMv2_2703_4_12 7296 7670 + 1.A.77.3.18
TC HRGMv2_2703_4 HRGMv2_2703_4_13 7675 8397 + 3.A.2.1.5
TC HRGMv2_2703_4 HRGMv2_2703_4_14 8452 8709 + 3.A.2.1.2
pfam HRGMv2_2703_4 HRGMv2_2703_4_15 8951 9454 + ATP-synt_B
pfam HRGMv2_2703_4 HRGMv2_2703_4_16 9461 10009 + OSCP
TC HRGMv2_2703_4 HRGMv2_2703_4_17 10015 11520 + 3.A.2.1.5
TC HRGMv2_2703_4 HRGMv2_2703_4_18 11542 12405 + 3.A.2.1.5
TC HRGMv2_2703_4 HRGMv2_2703_4_19 12505 13902 + 3.A.2.1.5
TC HRGMv2_2703_4 HRGMv2_2703_4_20 13904 14305 + 3.A.2.1.2
TC HRGMv2_2703_4 HRGMv2_2703_4_21 14468 15178 + 9.B.143.2.3
pfam HRGMv2_2703_4 HRGMv2_2703_4_22 15182 15982 + Hydrolase | S6PP | Hydrolase_3
CAZyme HRGMv2_2703_4 HRGMv2_2703_4_23 16118 17134 - GH177
pfam HRGMv2_2703_4 HRGMv2_2703_4_24 17193 18032 - AP_endonuc_2
TF HRGMv2_2703_4 HRGMv2_2703_4_25 18242 19159 + HTH_AraC | HTH_AraC
TC HRGMv2_2703_4 HRGMv2_2703_4_26 19324 20883 + 2.A.66.2.14
Gene ID: HRGMv2_2703_4_12
Type: TC
Location: 7296 - 7670 (+)
Gene ID: HRGMv2_2703_4_13
Type: TC
Location: 7675 - 8397 (+)
Gene ID: HRGMv2_2703_4_14
Type: TC
Location: 8452 - 8709 (+)
Gene ID: HRGMv2_2703_4_15
Type: pfam
Location: 8951 - 9454 (+)
Gene ID: HRGMv2_2703_4_16
Type: pfam
Location: 9461 - 10009 (+)
Gene ID: HRGMv2_2703_4_17
Type: TC
Location: 10015 - 11520 (+)
Gene ID: HRGMv2_2703_4_18
Type: TC
Location: 11542 - 12405 (+)
Gene ID: HRGMv2_2703_4_19
Type: TC
Location: 12505 - 13902 (+)
Gene ID: HRGMv2_2703_4_20
Type: TC
Location: 13904 - 14305 (+)
Gene ID: HRGMv2_2703_4_21
Type: TC
Location: 14468 - 15178 (+)
Gene ID: HRGMv2_2703_4_22
Type: pfam
Location: 15182 - 15982 (+)
Gene ID: HRGMv2_2703_4_23
Type: CAZyme
Location: 16118 - 17134 (-)
Gene ID: HRGMv2_2703_4_24
Type: pfam
Location: 17193 - 18032 (-)
Gene ID: HRGMv2_2703_4_25
Type: TF
Location: 18242 - 19159 (+)
Gene ID: HRGMv2_2703_4_26
Type: TC
Location: 19324 - 20883 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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