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Cluster: HRGMv2_2703_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2703_1 HRGMv2_2703_1_70 75903 76256 + 2.A.7.33.5
NULL(UNKNOWN) HRGMv2_2703_1 HRGMv2_2703_1_71 76272 76901 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_2703_1 HRGMv2_2703_1_72 77455 78441 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2703_1 HRGMv2_2703_1_73 78438 79712 - 2.A.16.2.2
NULL(UNKNOWN) HRGMv2_2703_1 HRGMv2_2703_1_74 80115 80327 - NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_2703_1 HRGMv2_2703_1_75 80839 81678 - HTH_AraC | HTH_AraC
TC HRGMv2_2703_1 HRGMv2_2703_1_76 81982 83577 + 2.A.21.3.21
CAZyme HRGMv2_2703_1 HRGMv2_2703_1_77 83686 84816 + GH109
Gene ID: HRGMv2_2703_1_70
Type: TC
Location: 75903 - 76256 (+)
Gene ID: HRGMv2_2703_1_71
Type:
Location: 76272 - 76901 (+)
Gene ID: HRGMv2_2703_1_72
Type:
Location: 77455 - 78441 (-)
Gene ID: HRGMv2_2703_1_73
Type: TC
Location: 78438 - 79712 (-)
Gene ID: HRGMv2_2703_1_74
Type:
Location: 80115 - 80327 (-)
Gene ID: HRGMv2_2703_1_75
Type: TF
Location: 80839 - 81678 (-)
Gene ID: HRGMv2_2703_1_76
Type: TC
Location: 81982 - 83577 (+)
Gene ID: HRGMv2_2703_1_77
Type: CAZyme
Location: 83686 - 84816 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2703_1_73 vegan > omnivore 1.27147 0.00701
HRGMv2_2703_1_77 vegan > omnivore 1.07382 0.00701

🧭 Explore Read Mapping of CGC

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