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Cluster: HRGMv2_2703_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2703_10 HRGMv2_2703_10_64 66379 67074 + 9.B.120.1.1
TF HRGMv2_2703_10 HRGMv2_2703_10_65 67178 67615 + 0040517
TC HRGMv2_2703_10 HRGMv2_2703_10_66 67602 68936 + 2.A.66.1.37
CAZyme HRGMv2_2703_10 HRGMv2_2703_10_67 69219 70244 - GH177
STP HRGMv2_2703_10 HRGMv2_2703_10_68 70327 71358 - Peripla_BP_1
pfam HRGMv2_2703_10 HRGMv2_2703_10_69 71426 72301 - AP_endonuc_2
TC HRGMv2_2703_10 HRGMv2_2703_10_70 72358 74019 - 2.A.21.3.21
TF HRGMv2_2703_10 HRGMv2_2703_10_71 74327 75349 + LacI
TF HRGMv2_2703_10 HRGMv2_2703_10_72 75760 76176 + MarR
TC HRGMv2_2703_10 HRGMv2_2703_10_73 76194 76856 + 2.A.115.2.8
Gene ID: HRGMv2_2703_10_64
Type: TC
Location: 66379 - 67074 (+)
Gene ID: HRGMv2_2703_10_65
Type: TF
Location: 67178 - 67615 (+)
Gene ID: HRGMv2_2703_10_66
Type: TC
Location: 67602 - 68936 (+)
Gene ID: HRGMv2_2703_10_67
Type: CAZyme
Location: 69219 - 70244 (-)
Gene ID: HRGMv2_2703_10_68
Type: STP
Location: 70327 - 71358 (-)
Gene ID: HRGMv2_2703_10_69
Type: pfam
Location: 71426 - 72301 (-)
Gene ID: HRGMv2_2703_10_70
Type: TC
Location: 72358 - 74019 (-)
Gene ID: HRGMv2_2703_10_71
Type: TF
Location: 74327 - 75349 (+)
Gene ID: HRGMv2_2703_10_72
Type: TF
Location: 75760 - 76176 (+)
Gene ID: HRGMv2_2703_10_73
Type: TC
Location: 76194 - 76856 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2703_10_67 vegan > omnivore 1.02543 0.00701
HRGMv2_2703_10_70 vegan > omnivore 1.14365 0.00701

🧭 Explore Read Mapping of CGC

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