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Cluster: HRGMv2_2702_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2702_9 HRGMv2_2702_9_22 17892 18746 - 3.A.1.1.11
TC HRGMv2_2702_9 HRGMv2_2702_9_23 18743 19663 - 3.A.1.1.20
STP HRGMv2_2702_9 HRGMv2_2702_9_24 19773 21182 - SBP_bac_1
CAZyme HRGMv2_2702_9 HRGMv2_2702_9_25 21243 23189 - GH127
TF HRGMv2_2702_9 HRGMv2_2702_9_26 23626 24651 + LacI
CAZyme HRGMv2_2702_9 HRGMv2_2702_9_27 24655 26130 + GH51_1
CAZyme HRGMv2_2702_9 HRGMv2_2702_9_28 26604 33293 - GH121
pfam HRGMv2_2702_9 HRGMv2_2702_9_29 33412 40422 - SLH | SLH | SLH | Big_4 | DUF5695 | DUF5695 | DUF5695 | K319L-like_PKD
pfam HRGMv2_2702_9 HRGMv2_2702_9_30 41019 41672 - Ubie_methyltran | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31
TC HRGMv2_2702_9 HRGMv2_2702_9_31 43025 44026 - 3.A.1.2.15
TC HRGMv2_2702_9 HRGMv2_2702_9_32 44041 45552 - 3.A.1.2.20
Gene ID: HRGMv2_2702_9_22
Type: TC
Location: 17892 - 18746 (-)
Gene ID: HRGMv2_2702_9_23
Type: TC
Location: 18743 - 19663 (-)
Gene ID: HRGMv2_2702_9_24
Type: STP
Location: 19773 - 21182 (-)
Gene ID: HRGMv2_2702_9_25
Type: CAZyme
Location: 21243 - 23189 (-)
Gene ID: HRGMv2_2702_9_26
Type: TF
Location: 23626 - 24651 (+)
Gene ID: HRGMv2_2702_9_27
Type: CAZyme
Location: 24655 - 26130 (+)
Gene ID: HRGMv2_2702_9_28
Type: CAZyme
Location: 26604 - 33293 (-)
Gene ID: HRGMv2_2702_9_29
Type: pfam
Location: 33412 - 40422 (-)
Gene ID: HRGMv2_2702_9_30
Type: pfam
Location: 41019 - 41672 (-)
Gene ID: HRGMv2_2702_9_31
Type: TC
Location: 43025 - 44026 (-)
Gene ID: HRGMv2_2702_9_32
Type: TC
Location: 44041 - 45552 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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