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Cluster: HRGMv2_2693_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2693_7 HRGMv2_2693_7_4 4997 6232 + GH3
pfam HRGMv2_2693_7 HRGMv2_2693_7_5 6696 7166 - DUF188
pfam HRGMv2_2693_7 HRGMv2_2693_7_6 7166 7837 - Pro_isomerase
TC HRGMv2_2693_7 HRGMv2_2693_7_7 7973 8815 + 3.A.1.103.5
TC HRGMv2_2693_7 HRGMv2_2693_7_8 8820 10094 + 3.A.1.103.5
pfam HRGMv2_2693_7 HRGMv2_2693_7_9 10249 13098 - Acyl_transf_3
pfam HRGMv2_2693_7 HRGMv2_2693_7_10 13286 14893 - PMT_2
CAZyme HRGMv2_2693_7 HRGMv2_2693_7_11 14880 15830 - GT2
pfam HRGMv2_2693_7 HRGMv2_2693_7_12 16178 17152 + PFK
NULL(UNKNOWN) HRGMv2_2693_7 HRGMv2_2693_7_13 17231 18886 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2693_7 HRGMv2_2693_7_14 18889 19677 + 1.A.23.2.1
Gene ID: HRGMv2_2693_7_4
Type: CAZyme
Location: 4997 - 6232 (+)
Gene ID: HRGMv2_2693_7_5
Type: pfam
Location: 6696 - 7166 (-)
Gene ID: HRGMv2_2693_7_6
Type: pfam
Location: 7166 - 7837 (-)
Gene ID: HRGMv2_2693_7_7
Type: TC
Location: 7973 - 8815 (+)
Gene ID: HRGMv2_2693_7_8
Type: TC
Location: 8820 - 10094 (+)
Gene ID: HRGMv2_2693_7_9
Type: pfam
Location: 10249 - 13098 (-)
Gene ID: HRGMv2_2693_7_10
Type: pfam
Location: 13286 - 14893 (-)
Gene ID: HRGMv2_2693_7_11
Type: CAZyme
Location: 14880 - 15830 (-)
Gene ID: HRGMv2_2693_7_12
Type: pfam
Location: 16178 - 17152 (+)
Gene ID: HRGMv2_2693_7_13
Type:
Location: 17231 - 18886 (+)
Gene ID: HRGMv2_2693_7_14
Type: TC
Location: 18889 - 19677 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2693_7_6 vegan > omnivore 2.39569 0.00324

🧭 Explore Read Mapping of CGC

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