Cluster: HRGMv2_2693_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2693
- CGC Family ID: CGCFAM_08500
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2693_5 | HRGMv2_2693_5_100 | 110264 | 111958 | + | GH13_20 |
| CAZyme | HRGMv2_2693_5 | HRGMv2_2693_5_101 | 112175 | 114259 | + | GH13_11 |
| NULL(UNKNOWN) | HRGMv2_2693_5 | HRGMv2_2693_5_102 | 114319 | 114411 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2693_5 | HRGMv2_2693_5_103 | 114561 | 115766 | - | FtsX |
| TC | HRGMv2_2693_5 | HRGMv2_2693_5_104 | 115768 | 116436 | - | 3.A.1.122.8 |
Gene ID: HRGMv2_2693_5_100
Type: CAZyme
Location: 110264 - 111958 (+)
Type: CAZyme
Location: 110264 - 111958 (+)
Gene ID: HRGMv2_2693_5_101
Type: CAZyme
Location: 112175 - 114259 (+)
Type: CAZyme
Location: 112175 - 114259 (+)
Gene ID: HRGMv2_2693_5_102
Type:
Location: 114319 - 114411 (-)
Type:
Location: 114319 - 114411 (-)
Gene ID: HRGMv2_2693_5_103
Type: pfam
Location: 114561 - 115766 (-)
Type: pfam
Location: 114561 - 115766 (-)
Gene ID: HRGMv2_2693_5_104
Type: TC
Location: 115768 - 116436 (-)
Type: TC
Location: 115768 - 116436 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Ruminococcus_E
Species
Ruminococcus_E bromii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2693_5_103 | vegetarian > vegan | 3.42310 | 0.01810 |
| HRGMv2_2693_5_104 | vegetarian > vegan | 17.97144 | 0.00611 |