Cluster: HRGMv2_2693_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2693
- CGC Family ID: CGCFAM_03789
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2693_5 | HRGMv2_2693_5_35 | 34412 | 36616 | - | CBM74 |
| pfam | HRGMv2_2693_5 | HRGMv2_2693_5_36 | 36861 | 37679 | - | SseB | SseB_C |
| CAZyme | HRGMv2_2693_5 | HRGMv2_2693_5_37 | 37842 | 39548 | - | GH13_28 |
| pfam | HRGMv2_2693_5 | HRGMv2_2693_5_38 | 39783 | 40847 | + | Glycos_transf_2 | GtrA_DPMS_TM |
| TC | HRGMv2_2693_5 | HRGMv2_2693_5_39 | 40960 | 41763 | - | 3.A.1.34.1 |
| TC | HRGMv2_2693_5 | HRGMv2_2693_5_40 | 41766 | 42731 | - | 3.A.1.34.1 |
Gene ID: HRGMv2_2693_5_35
Type: CAZyme
Location: 34412 - 36616 (-)
Type: CAZyme
Location: 34412 - 36616 (-)
Gene ID: HRGMv2_2693_5_36
Type: pfam
Location: 36861 - 37679 (-)
Type: pfam
Location: 36861 - 37679 (-)
Gene ID: HRGMv2_2693_5_37
Type: CAZyme
Location: 37842 - 39548 (-)
Type: CAZyme
Location: 37842 - 39548 (-)
Gene ID: HRGMv2_2693_5_38
Type: pfam
Location: 39783 - 40847 (+)
Type: pfam
Location: 39783 - 40847 (+)
Gene ID: HRGMv2_2693_5_39
Type: TC
Location: 40960 - 41763 (-)
Type: TC
Location: 40960 - 41763 (-)
Gene ID: HRGMv2_2693_5_40
Type: TC
Location: 41766 - 42731 (-)
Type: TC
Location: 41766 - 42731 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Ruminococcus_E
Species
Ruminococcus_E bromii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.