Cluster: HRGMv2_2693_CGC4
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2693
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2693_3 | HRGMv2_2693_3_97 | 87773 | 88558 | - | CE4 |
| pfam | HRGMv2_2693_3 | HRGMv2_2693_3_98 | 88653 | 90059 | - | tRNA-synt_1e | CysS_C |
| pfam | HRGMv2_2693_3 | HRGMv2_2693_3_99 | 90063 | 90716 | - | Hexapep | SATase_N | Hexapep_2 |
| TC | HRGMv2_2693_3 | HRGMv2_2693_3_100 | 90754 | 91338 | - | 4.F.1.1.7 |
Gene ID: HRGMv2_2693_3_97
Type: CAZyme
Location: 87773 - 88558 (-)
Type: CAZyme
Location: 87773 - 88558 (-)
Gene ID: HRGMv2_2693_3_98
Type: pfam
Location: 88653 - 90059 (-)
Type: pfam
Location: 88653 - 90059 (-)
Gene ID: HRGMv2_2693_3_99
Type: pfam
Location: 90063 - 90716 (-)
Type: pfam
Location: 90063 - 90716 (-)
Gene ID: HRGMv2_2693_3_100
Type: TC
Location: 90754 - 91338 (-)
Type: TC
Location: 90754 - 91338 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Ruminococcus_E
Species
Ruminococcus_E bromii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2693_3_98 | vegetarian > omnivore | 1.05194 | 0.00290 |
| HRGMv2_2693_3_100 | vegetarian > vegan | 2.31834 | 0.00082 |