Cluster: HRGMv2_2693_CGC2
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2693
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2693_1 | HRGMv2_2693_1_90 | 106934 | 108433 | + | 3.A.1.1.27 |
| TC | HRGMv2_2693_1 | HRGMv2_2693_1_91 | 108430 | 109293 | + | 3.A.1.1.27 |
| CAZyme | HRGMv2_2693_1 | HRGMv2_2693_1_92 | 109364 | 111019 | + | GH13_36 |
Gene ID: HRGMv2_2693_1_90
Type: TC
Location: 106934 - 108433 (+)
Type: TC
Location: 106934 - 108433 (+)
Gene ID: HRGMv2_2693_1_91
Type: TC
Location: 108430 - 109293 (+)
Type: TC
Location: 108430 - 109293 (+)
Gene ID: HRGMv2_2693_1_92
Type: CAZyme
Location: 109364 - 111019 (+)
Type: CAZyme
Location: 109364 - 111019 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Ruminococcus_E
Species
Ruminococcus_E bromii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2693_1_90 | vegetarian > vegan | 1.27393 | 0.01810 |
| HRGMv2_2693_1_91 | vegan > omnivore | 2.09395 | 0.00324 |